Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizopus_20microsporus_20[genbank_20GCA_5F900000135.1_202014-11-26] 1,386 sequences; 49,591,775 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq1 127 4e-24 seq4 113 8e-20 >seq1 Length=2399970 Score = 127 bits (140), Expect = 4e-24 Identities = 168/233 (72%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 |||||||| | || || | || || || | ||||| ||||| || || || || Sbjct 341876 ATACCACCACGGAGACGGAGGACCAAGTGAAGAGTAGATTCTTTTTGGATGTTGTAGTCA 341817 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || | || || | || || | ||||||||||||||| || | ||||||||||||||| Sbjct 341816 GAGAGAGTACGGCCATCCTCGAGTTGTTTACCAGCAAAGATAAGTCTCTGTTGGTCAGGA 341757 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || ||||| |||||||| || || | || ||||| ||| |||| || ||||| Sbjct 341756 GGGATACCTTCCTTATCTTGAATCTTTTGCTTGACATTTTCGATACTATCAGAAGATTCG 341697 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTT 172072 ||||||| |||||| || || || || | || || | ||| || |||||||| Sbjct 341696 ACTTCTAAAGTAATTGTCTTGCCGGTAAGAGTCTTTACGAAGATTTGCATTTT 341644 Score = 105 bits (116), Expect = 1e-17 Identities = 142/198 (72%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 171872 AGTAGCCTCTTTAGAAATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACC 171931 ||||| ||||| ||| |||||||| |||| || |||| || | ||||||||| Sbjct 342542 AGTAGATTCTTTTTGAATGTTATAATCACTCAAAGTACGACCGTCTTCGAGTTGTTTACC 342483 Query 171932 AGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTT 171991 ||| ||||| | | ||||||||||| || || ||||| |||||||| || || | || Sbjct 342482 AGCGAAAATGAGACGTTGTTGGTCAGGAGGGATACCTTCCTTATCTTGAATCTTTTGCTT 342423 Query 171992 TACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGT 172051 ||||| ||| |||| || || || ||||| | || ||||| |||||||| | || Sbjct 342422 GACATTTTCAATACTATCGGAAGACTCAACTTCCAAGGTGATGGTCTTACCAGTAAGAGT 342363 Query 172052 TTTAATGAATATCTGCAT 172069 || | || || ||||| Sbjct 342362 CTTGACAAAGATTTGCAT 342345 >seq4 Length=1094480 Score = 113 bits (124), Expect = 8e-20 Identities = 174/246 (71%), Gaps = 3/246 (1%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 |||||||| | || || | || || || | ||||| || || || ||||| || Sbjct 349662 ATACCACCACGGAGACGAAGGACCAAGTGAAGAGTAGATTCCTTTTGGATGTTATAGTCG 349603 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || || || | || || | ||||||||||||||| || | | ||||| ||||| Sbjct 349602 CTTAGAGTACGGCCATCTTCGAGTTGTTTACCAGCAAAGATGAGACGTTGTTGATCAGGA 349543 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || ||||| || ||||| || || | ||||||||| ||||| || || ||||| Sbjct 349542 GGAATACCTTCCTTGTCTTGAATCTTTTGTTTTACATTGTCGATAGTGTCAGAAGATTCA 349483 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT--TTTA-TTA 172076 ||||||| |||||| || || ||||| | ||| || | || || ||||| | || ||| Sbjct 349482 ACTTCTAAAGTAATTGTCTTTCCAGTAAGTGTCTTGACAAAGATTTGCATGATGTATTTA 349423 Query 172077 TAAAAA 172082 |||||| Sbjct 349422 TAAAAA 349417 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 905120318518800