Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizopus_20microsporus_20[genbank_20GCA_5F900000135.1_202014-11-26] 1,386 sequences; 49,591,775 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq26 141 1e-27 seq17 134 2e-25 seq47 125 1e-22 seq25 123 4e-22 seq107 100 5e-15 >seq26 Length=359709 Score = 141 bits (156), Expect = 1e-27 Identities = 178/242 (74%), Gaps = 2/242 (1%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||||||||| ||||||||||| || |||||||||||| |||| ||||| || | | Sbjct 57924 TGTACTTGGTGACAGCCTTGGTACCTTCAGAGACGGCGTGCTTGGCGAGTTCACCAGGGA 57983 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 ||| || || || ||||| ||||| || || | ||| ||| |||||||| || Sbjct 57984 GGATGAGACGAACAGCGGTTTGGATTTCACGAGAAGAGATGGTGGAACGCTTGTT-GTAA 58042 Query 1485590 GC-GCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTC 1485648 || |||| | ||| || ||| | || || || | || || |||||||| |||||| Sbjct 58043 GCAGCCAACTTGGAGGCTTCAGTGGCAATACGTTCAAAGATATCATTGACAAAGGAGTTC 58102 Query 1485649 ATGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTG 1485708 | ||| ||||| | ||||| ||||| || |||||||| || ||||| | |||||| Sbjct 58103 AAGATGGACATGGCCTTGTTAGAGATACCGGTATCGGGGTGGACTTGCTTCAAGACCTTG 58162 Query 1485709 TA 1485710 || Sbjct 58163 TA 58164 Score = 141 bits (156), Expect = 1e-27 Identities = 178/242 (74%), Gaps = 2/242 (1%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||||||||| ||||||||||| || |||||||||||| |||| ||||| || | | Sbjct 63211 TGTACTTGGTGACAGCCTTGGTACCTTCAGAGACGGCGTGCTTGGCGAGTTCACCAGGGA 63152 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 ||| || || || ||||| ||||| || || | ||| ||| |||||||| || Sbjct 63151 GGATGAGACGAACAGCGGTTTGGATTTCACGAGAAGAGATGGTGGAACGCTTGTT-GTAA 63093 Query 1485590 GC-GCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTC 1485648 || |||| | ||| || ||| | || || || | || || |||||||| |||||| Sbjct 63092 GCAGCCAACTTGGAGGCTTCAGTGGCAATACGTTCAAAGATATCATTGACAAAGGAGTTC 63033 Query 1485649 ATGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTG 1485708 | ||| ||||| | ||||| ||||| || |||||||| || ||||| | |||||| Sbjct 63032 AAGATGGACATGGCCTTGTTAGAGATACCGGTATCGGGGTGGACTTGCTTCAAGACCTTG 62973 Query 1485709 TA 1485710 || Sbjct 62972 TA 62971 >seq17 Length=565816 Score = 134 bits (148), Expect = 2e-25 Identities = 184/257 (72%), Gaps = 0/257 (0%) Strand=Plus/Plus Query 2073541 TGGTCGACATAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACAAGGCCGTTGGAC 2073600 || |||||||| || ||||| | ||| || || ||||||||||||| | |||||||| Sbjct 455845 TGATCGACATAACGAGCCGTATTGTTGAAAACACGGAGCATGGGCAGTAATCCGTTGGAG 455904 Query 2073601 TCGCCGTTGGTGCCCGCCACGTAGGCGCCCGAGGCGCGCACCTTGTGCGCGGCAAAGCCG 2073660 | ||||||||||| || | || | || || || | ||||| | ||||| Sbjct 455905 TAACCGTTGGTGCCGGCAATATATGATCCACTAGCACGAATGTTGTGAATGTTCAAGCCA 455964 Query 2073661 ATGCCGCCGGCCGCCTTGGAGATGAGCGCGCACTTTTTCAGCGTCTCGTAGATGCCCTCG 2073720 |||||||| || | ||||||||| | || || |||| |||||||| ||||| || ||| Sbjct 455965 ATGCCGCCTGCTGTCTTGGAGATTTGAGCACAGATTTTGAGCGTCTCATAGATACCTTCG 456024 Query 2073721 ATCGAGTCGGCCTTCATGTCCAACAGAAAGCACGACGAGTTTTGCGGGCGCGCCGTGCCG 2073780 ||||| || |||||||| | || ||||| || || |||| || || | ||||| Sbjct 456025 ATCGAATCTTCCTTCATGGTGAGCAAGAAGCAAGAAGACATTTGGGGACGAGGTGTGCCT 456084 Query 2073781 GCATTGAAGAGCGTGGG 2073797 ||||| || || || || Sbjct 456085 GCATTAAATAGAGTAGG 456101 Score = 96.9 bits (106), Expect = 5e-14 Identities = 127/176 (72%), Gaps = 0/176 (0%) Strand=Plus/Minus Query 2073547 ACATAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACAAGGCCGTTGGACTCGCCG 2073606 ||| |||| || ||||| |||||||| | |||||| || | || ||| ||||| |||| Sbjct 414406 ACAAAGCGAGCAGTGTCATTAAAGACTCTGAGCATTGGAATAATGCCATTGGAGGTGCCG 414347 Query 2073607 TTGGTGCCCGCCACGTAGGCGCCCGAGGCGCGCACCTTGTGCGCGGCAAAGCCGATGCCG 2073666 || || || || | || | ||| ||| | || | ||| || || |||| ||| | ||| Sbjct 414346 TTTGTTCCTGCGATATAAGAGCCAGAGCCACGAATCTTTTGAGCAGCAACGCCAACACCG 414287 Query 2073667 CCGGCCGCCTTGGAGATGAGCGCGCACTTTTTCAGCGTCTCGTAGATGCCCTCGAT 2073722 || || | ||||||||| | || ||| | | | || ||||||||||| ||||| Sbjct 414286 CCAGCAGACTTGGAGATACGAGCACACGTGGTGATAGTATCGTAGATGCCTTCGAT 414231 >seq47 Length=189370 Score = 125 bits (138), Expect = 1e-22 Identities = 182/257 (71%), Gaps = 0/257 (0%) Strand=Plus/Plus Query 2073541 TGGTCGACATAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACAAGGCCGTTGGAC 2073600 || |||||||| || ||||| | ||| || || ||||||||||||| || |||||||| Sbjct 153098 TGATCGACATAACGAGCCGTATTGTTGAAAACACGGAGCATGGGCAATAGTCCGTTGGAG 153157 Query 2073601 TCGCCGTTGGTGCCCGCCACGTAGGCGCCCGAGGCGCGCACCTTGTGCGCGGCAAAGCCG 2073660 | |||||||| || || | ||| | || || || | ||||| | ||||| Sbjct 153158 TAACCGTTGGTACCGGCAATGTATGATCCACTAGCACGAATGTTGTGAATGTTCAAGCCA 153217 Query 2073661 ATGCCGCCGGCCGCCTTGGAGATGAGCGCGCACTTTTTCAGCGTCTCGTAGATGCCCTCG 2073720 || || || || | ||||||||| | || || |||| |||||||| ||||| || ||| Sbjct 153218 ATACCACCTGCTGTCTTGGAGATTTGAGCACAGATTTTGAGCGTCTCATAGATACCTTCG 153277 Query 2073721 ATCGAGTCGGCCTTCATGTCCAACAGAAAGCACGACGAGTTTTGCGGGCGCGCCGTGCCG 2073780 ||||| || |||||||| | || ||||| || || | || || || | ||||| Sbjct 153278 ATCGAATCTTCCTTCATGGTGAGCAAGAAGCAAGAAGACATCTGGGGACGAGGTGTGCCT 153337 Query 2073781 GCATTGAAGAGCGTGGG 2073797 ||||| || || || || Sbjct 153338 GCATTAAATAGAGTAGG 153354 >seq25 Length=399763 Score = 123 bits (136), Expect = 4e-22 Identities = 174/242 (72%), Gaps = 2/242 (1%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||||||||| ||||||||||| || ||||| |||||| |||| ||||| || | | Sbjct 289096 TGTACTTGGTGACAGCCTTGGTACCTTCAGAGACAGCGTGCTTGGCGAGTTCACCAGGAA 289155 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 || || || || || || || || || || | ||| ||| |||||||| || Sbjct 289156 GAATGAGACGAACAGCAGTTTGAATTTCACGAGAAGAGATGGTGGAACGCTTGTT-GTAA 289214 Query 1485590 GC-GCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTC 1485648 || |||| | ||| || ||| | || || || | || || |||||||| |||||| Sbjct 289215 GCAGCCAACTTGGAGGCTTCAGTGGCAATACGTTCAAAGATATCATTGACAAAAGAGTTC 289274 Query 1485649 ATGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTG 1485708 | ||| ||||| | ||||||||||| || || ||||| || ||||| | |||||| Sbjct 289275 AAGATGGACATGGCCTTGTTGGAGATACCAGTATCAGGGTGAACTTGCTTCAAGACCTTG 289334 Query 1485709 TA 1485710 || Sbjct 289335 TA 289336 >seq107 Length=77526 Score = 100 bits (110), Expect = 5e-15 Identities = 222/332 (67%), Gaps = 12/332 (4%) Strand=Plus/Plus Query 794341 CCTTCGTCGCGACTGATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTTC 794400 ||||| || |||| ||||||||| ||||| || | || ||||| | || || ||| Sbjct 40044 CCTTCATCACGACAGATCAATTCATTGCTGAATGTCAAACCAGGCATCAAACCACGTTTC 40103 Query 794401 TTGAGCCAAAAGATG---GCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCA 794457 ||||||||||| ||| ||| || || || ||||| ||||| || ||||| || ||| Sbjct 40104 TTGAGCCAAAAAATGGAAGCAAAGGAA---CCAGAGAAGAAGATACCTTCGACAGCAGCA 40160 Query 794458 AAGCCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTCTTTGTTGATCCACTTCATCGCC 794517 ||| | || || ||||| ||||||| || | | |||||||| | ||| Sbjct 40161 AAGGCAACAAGACGCTCAGCAAAAG------AACCGTTAGAGGAAATCCACTTGAAGGCC 40214 Query 794518 CACTCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTTC 794577 || || |||||| | | | | || | ||||| || || |||||| || ||| Sbjct 40215 CAATCAGCCTTTCTTTTGATACAAGGGATAGTGTCAATAGCAGAAAAGAGCATTTCTTTC 40274 Query 794578 TCGACCGGGTCCTTGACGTAGGTGTCGATGAGGAGCGAGTAGGTCTCTGAGTGGATGTTT 794637 || || |||| || ||||| || | || ||| || |||| ||| |||||| Sbjct 40275 TCTTGGTTATCTTTGATATAAGTGTCAATCAAAAGACTGTAAGTTTCTGCGTGAATGTTT 40334 Query 794638 TCGATGGCGATCTGGAAGCCATAAAAGCAGTT 794669 || || ||| || |||||||| || || || Sbjct 40335 TCAATCATGATTTGAAAGCCATAGAAACATTT 40366 Score = 93.3 bits (102), Expect = 7e-13 Identities = 153/217 (71%), Gaps = 4/217 (2%) Strand=Plus/Plus Query 793926 TCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATCAACTCCATCCACGGGAACGGGTTGGCC 793985 || || |||||||||||||| | || ||||||| ||||| | || || |||| Sbjct 39756 TCAAAGAAGTTGGTCTTGCCTTGAAGAGAGATCATGTCCATAAAGTCAAATGGATTGGTA 39815 Query 793986 GTCAGGTAGTGCTTCTCGCACCC--GAGCGACGCAAGCAGGCGGTCGGCGACGAATTCAA 794043 | || ||| ||| ||| | || |||| || || | ||||| || || |||||||| | Sbjct 39816 GCCATGTAAATCTTGTCGAATCCAAGAGCAAC-CATG-AGGCGATCAGCAACGAATTCGA 39873 Query 794044 TGTACTGGCACATGAGGGCGGCGTTCATGCCGATGAGCGCCACGGGCAGCGACTCGCTGA 794103 |||| |||||||| | ||| | |||||||||||||| || ||||| || | || | | Sbjct 39874 TGTATTGGCACATCAAGGCAGAATTCATGCCGATGAGAGCAACGGGAAGAGCATCCGTCA 39933 Query 794104 CAAACTCTTTCTCGATCTCGACGGCCTCGATGATGAT 794140 ||| || | || || ||| || || | |||||| Sbjct 39934 AAAATTCCTGTTCAATGCTGACAGCTTCCAAGATGAT 39970 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7916098964858454