Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizopus_20microsporus_20[genbank_20GCA_5F900000135.1_202014-11-26] 1,386 sequences; 49,591,775 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq4 141 7e-29 seq1 134 1e-26 seq27 102 6e-17 seq9 86.0 5e-12 >seq4 Length=1094480 Score = 141 bits (156), Expect = 7e-29 Identities = 161/216 (75%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 ||| || ||||| ||||| || ||||| ||||| |||||||| || | || || Sbjct 349648 ACGAAGGACCAAGTGAAGAGTAGATTCCTTTTGGATGTTATAGTCGCTTAGAGTACGGCC 349589 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 ||| ||||||||||| |||||| | || | | ||| ||||| || |||||||| || || Sbjct 349588 ATCTTCGAGTTGTTTACCAGCAAAGATGAGACGTTGTTGATCAGGAGGAATACCTTCCTT 349529 Query 29691 GTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTAT 29750 |||||| | |||||||| ||| | || | |||||||||| ||| ||||| | ||| || Sbjct 349528 GTCTTGAATCTTTTGTTTTACATTGTCGATAGTGTCAGAAGATTCAACTTCTAAAGTAAT 349469 Query 29751 AGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || || ||||| | || || ||||| || ||||| Sbjct 349468 TGTCTTTCCAGTAAGTGTCTTGACAAAGATTTGCAT 349433 >seq1 Length=2399970 Score = 134 bits (148), Expect = 1e-26 Identities = 161/219 (74%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 ||| || ||||| ||||| || ||||||||||| ||||| || || | | || || Sbjct 341862 ACGGAGGACCAAGTGAAGAGTAGATTCTTTTTGGATGTTGTAGTCAGAGAGAGTACGGCC 341803 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 ||| ||||||||||| |||||| | || | ||| || || || || || ||||| || || Sbjct 341802 ATCCTCGAGTTGTTTACCAGCAAAGATAAGTCTCTGTTGGTCAGGAGGGATACCTTCCTT 341743 Query 29691 GTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTAT 29750 ||||| | ||||| |||||| |||| | | | |||||| ||| ||||| | ||| || Sbjct 341742 ATCTTGAATCTTTTGCTTGACATTTTCGATACTATCAGAAGATTCGACTTCTAAAGTAAT 341683 Query 29751 AGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789 || ||||| || | || || || || || |||||||| Sbjct 341682 TGTCTTGCCGGTAAGAGTCTTTACGAAGATTTGCATTTT 341644 Score = 118 bits (130), Expect = 8e-22 Identities = 158/217 (73%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATC-CGCAATGGTGCGAG 29629 ||| || |||| ||||| || ||||||||||||||||||||||| | ||| | | ||| Sbjct 342560 ACGAAGAACCAGGTGAAGAGTAGATTCTTTTTGAATGTTATAATCACTCAAAG-TACGAC 342502 Query 29630 AATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTT 29689 || ||||||||||| ||||| | || | | ||| || || || || ||||| || | Sbjct 342501 CGTCTTCGAGTTGTTTACCAGCGAAAATGAGACGTTGTTGGTCAGGAGGGATACCTTCCT 342442 Query 29690 TGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTA 29749 | ||||| | ||||| |||||| |||| | | | || ||| || ||||| | || | Sbjct 342441 TATCTTGAATCTTTTGCTTGACATTTTCAATACTATCGGAAGACTCAACTTCCAAGGTGA 342382 Query 29750 TAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 | || || ||||| | || || ||||| || ||||| Sbjct 342381 TGGTCTTACCAGTAAGAGTCTTGACAAAGATTTGCAT 342345 Score = 98.7 bits (108), Expect = 8e-16 Identities = 109/147 (74%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 ||| || ||||| ||||| || ||||||||||| ||||| || || | || || Sbjct 342332 ACGGAGGACCAAGTGAAGAGTAGATTCTTTTTGGATGTTGTAGTCNNNNAGAGTACGGCC 342273 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 ||| || |||||||| ||||| | || | | |||||| || || |||||||| || || Sbjct 342272 ATCTTCAAGTTGTTTACCAGCGAAAATAAGACGTTGCTGGTCAGGAGGAATACCTTCCTT 342213 Query 29691 GTCTTGTAATTTTTGTTTGACAGTTTC 29717 |||||| | ||||| |||||| |||| Sbjct 342212 GTCTTGGATCTTTTGCTTGACATTTTC 342186 >seq27 Length=327670 Score = 102 bits (112), Expect = 6e-17 Identities = 120/160 (75%), Gaps = 2/160 (1%) Strand=Plus/Minus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATC-CGCAATGGTGCGAG 29629 ||| || ||||| ||||| || ||||| ||||||||||| ||||| | ||| ||| ||| Sbjct 85913 ACGGAGAACCAAGTGAAGGGTAGATTCCTTTTGAATGTTGTAATCACTCAA-GGTACGAC 85855 Query 29630 AATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTT 29689 || ||||||||||| || || | || | | ||| ||||| || || ||||| || | Sbjct 85854 CGTCTTCGAGTTGTTTACCGGCGAAAATGAGACGTTGTTGATCAGGAGGGATACCTTCCT 85795 Query 29690 TGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGA 29729 | ||||| | ||||| |||||| | || | |||||||| Sbjct 85794 TATCTTGGATCTTTTGCTTGACATTGTCAATGGTGTCAGA 85755 >seq9 Length=817392 Score = 86.0 bits (94), Expect = 5e-12 Identities = 117/161 (73%), Gaps = 2/161 (1%) Strand=Plus/Plus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATC-CGCAATGGTGCGAG 29629 ||| || || || || || || ||||| ||||| ||||| || || | ||| ||| ||| Sbjct 168570 ACGGAGAACTAAGTGGAGAGTAGATTCCTTTTGGATGTTGTAGTCGCTCAA-GGTACGAC 168628 Query 29630 AATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTT 29689 || ||||||||||| || ||| | || | | ||| || || || |||||||| || | Sbjct 168629 CGTCTTCGAGTTGTTTACCGGCAAAGATAAGACGTTGTTGGTCAGGAGGAATACCTTCCT 168688 Query 29690 TGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAA 29730 ||||||| | ||||| ||||| | || | ||||| ||| Sbjct 168689 TGTCTTGAATCTTTTGCTTGACGTTGTCAATGGTGTCGGAA 168729 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 385212692925426