Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizopus_20microsporus_20[genbank_20GCA_5F900000135.1_202014-11-26] 1,386 sequences; 49,591,775 total letters Query= NC_023615.1 Length=196456 Score E Sequences producing significant alignments: (Bits) Value seq176 107 2e-18 seq13 84.2 3e-11 >seq176 Length=52331 Score = 107 bits (118), Expect = 2e-18 Identities = 189/273 (69%), Gaps = 3/273 (1%) Strand=Plus/Minus Query 171611 AAGAACTTTTATGGGTTATTAAAGGTTCAACTGATTCAAAACAATTAAATGATATAGGTG 171670 ||||||| | ||| | || ||||| || | ||||| || ||| ||| | | | Sbjct 28396 AAGAACTGCTTTGGTTCATAAAAGGAGATACAAACTCAAAGCATCTAAGTGAAAGAAATA 28337 Query 171671 TTAAAGTTTGGAATGATAATGGTTCTCGTGAATTTTTAGATTTATGCGGGTTTACTGAAA 171730 | ||| ||||| ||| || |||||||| |||| | | || | || ||||| | Sbjct 28336 TCAAAATTTGGGATGGCAACGGTTCTCGCGAATATCTCGACAAGTTGGGTCTTACTCACC 28277 Query 171731 GAAAAGAAGGTGATTTAGGTCCAATTTATGGATTTCAATGGAGACATGCAGGGGCTCAAT 171790 | |||||||| | || ||| | || ||||||||||||||||| || || ||| Sbjct 28276 GTCGTGAAGGTGACCTTGGACCAGTCTACGGATTTCAATGGAGACACTTTGGCGCCAAAT 28217 Query 171791 ATATCGACTGTTATACAGATTACACAGGACAAGGAGTGGACCAATTAAGTCAAACTATTA 171850 | | |||||| |||| ||||| ||||||||||| || || |||||| ||| ||| Sbjct 28216 ACGTTGACTGTGATACTGATTATACAGGACAAGGCGTTGATCAATTACAACAAGTGATTG 28157 Query 171851 ATACTTTACAAAACAA-CCCA--GAAAGTAGAA 171880 ||||| || ||||||| |||| || |||||| Sbjct 28156 ATACTATAAAAAACAATCCCACTGATCGTAGAA 28124 >seq13 Length=664605 Score = 84.2 bits (92), Expect = 3e-11 Identities = 174/259 (67%), Gaps = 0/259 (0%) Strand=Plus/Plus Query 171611 AAGAACTTTTATGGGTTATTAAAGGTTCAACTGATTCAAAACAATTAAATGATATAGGTG 171670 |||| || | ||| | |||||||| || | ||||| || ||| ||| | | | Sbjct 416321 AAGAGCTGCTTTGGTTCATTAAAGGAGATACAAACTCAAAGCATCTAAGTGAAAGAAACG 416380 Query 171671 TTAAAGTTTGGAATGATAATGGTTCTCGTGAATTTTTAGATTTATGCGGGTTTACTGAAA 171730 | || ||||| ||| || |||||||| |||| | | || | || ||||| | Sbjct 416381 TCAAGATTTGGGATGGCAACGGTTCTCGCGAATATCTCGACAAGTTGGGTCTTACTCACC 416440 Query 171731 GAAAAGAAGGTGATTTAGGTCCAATTTATGGATTTCAATGGAGACATGCAGGGGCTCAAT 171790 | ||||| ||| | || ||| | || ||||||||||||||||| || || ||| Sbjct 416441 GTCGTGAAGGCGATCTTGGACCAGTCTACGGATTTCAATGGAGACACTTTGGTGCCAAAT 416500 Query 171791 ATATCGACTGTTATACAGATTACACAGGACAAGGAGTGGACCAATTAAGTCAAACTATTA 171850 | | || ||| || | ||||| ||||||||||| | || |||||| ||| ||| Sbjct 416501 ACGTTGATTGTGATGCTGATTATACAGGACAAGGCATTGATCAATTACAACAAGTGATTG 416560 Query 171851 ATACTTTACAAAACAACCC 171869 | ||| || ||||||| || Sbjct 416561 ACACTATAAAAAACAATCC 416579 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628520310696960