Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizopus_20microsporus_20[genbank_20GCA_5F900000135.1_202014-11-26] 1,386 sequences; 49,591,775 total letters Query= NC_023681.1 Length=152710 Score E Sequences producing significant alignments: (Bits) Value seq4 140 3e-28 seq9 116 4e-21 seq1 111 2e-19 seq27 102 8e-17 seq47 84.2 2e-11 seq17 84.2 2e-11 >seq4 Length=1094480 Score = 140 bits (154), Expect = 3e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244 || || || | ||| | || || |||| |||||||| ||||| ||||| || ||||| Sbjct 349659 CCACCACGGAGACGAAGGACCAAGTGAAGAGTAGATTCCTTTTGGATGTTATAGTCGCTT 349600 Query 137245 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 137304 | || | ||||||||||||||||||||| |||| |||||||| ||||| ||||| Sbjct 349599 AGAGTACGGCCATCTTCGAGTTGTTTACCAGCAAAGATGAGACGTTGTTGATCAGGAGGA 349540 Query 137305 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACT 137364 || ||||| ||||| ||| |||||||||| | || | ||||| | | ||| ||| Sbjct 349539 ATACCTTCCTTGTCTTGAATCTTTTGTTTTACATTGTCGATAGTGTCAGAAGATTCAACT 349480 Query 137365 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411 || | ||| | ||||| || || | ||| || || || |||||||| Sbjct 349479 TCTAAAGTAATTGTCTTTCCAGTAAGTGTCTTGACAAAGATTTGCAT 349433 >seq9 Length=817392 Score = 116 bits (128), Expect = 4e-21 Identities = 115/149 (77%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244 || || || | ||| | |||||| || | |||||||| ||||| |||||||| |||||| Sbjct 168559 CCACCACGAAGACGGAGAACTAAGTGGAGAGTAGATTCCTTTTGGATGTTGTAGTCGCTC 168618 Query 137245 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 137304 | || | |||||||||||||||||| ||| |||| |||||||| || || ||||| Sbjct 168619 AAGGTACGACCGTCTTCGAGTTGTTTACCGGCAAAGATAAGACGTTGTTGGTCAGGAGGA 168678 Query 137305 ATGCCTTCTTTGTCGGTAATTTTTTGTTT 137333 || ||||| ||||| ||| ||||| || Sbjct 168679 ATACCTTCCTTGTCTTGAATCTTTTGCTT 168707 >seq1 Length=2399970 Score = 111 bits (122), Expect = 2e-19 Identities = 163/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 137182 TGGCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCG 137241 || || || || | ||| | ||| | |||| |||||||||||||| ||||| ||||| Sbjct 342574 TGACCGCCACGAAGACGAAGAACCAGGTGAAGAGTAGATTCTTTTTGAATGTTATAATCA 342515 Query 137242 CTCATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGA 137301 |||| || | ||||||||||||||||||||| | || |||||||| || || ||| Sbjct 342514 CTCAAAGTACGACCGTCTTCGAGTTGTTTACCAGCGAAAATGAGACGTTGTTGGTCAGGA 342455 Query 137302 GGTATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCT 137361 || || ||||| || || ||| ||||| || | | ||| | | || | | || Sbjct 342454 GGGATACCTTCCTTATCTTGAATCTTTTGCTTGACATTTTCAATACTATCGGAAGACTCA 342395 Query 137362 ACTTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 137412 ||||| | || | ||||| || || | || || || || ||||||||| Sbjct 342394 ACTTCCAAGGTGATGGTCTTACCAGTAAGAGTCTTGACAAAGATTTGCATA 342344 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244 || || || | ||| | || || |||| |||||||||||||| |||||||| || Sbjct 341873 CCACCACGGAGACGGAGGACCAAGTGAAGAGTAGATTCTTTTTGGATGTTGTAGTCAGAG 341814 Query 137245 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 137304 | || | || |||||||||||||||||| |||| || | || || || ||||| Sbjct 341813 AGAGTACGGCCATCCTCGAGTTGTTTACCAGCAAAGATAAGTCTCTGTTGGTCAGGAGGG 341754 Query 137305 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACT 137364 || ||||| || || ||| ||||| || | | ||| | | || | | ||| ||| Sbjct 341753 ATACCTTCCTTATCTTGAATCTTTTGCTTGACATTTTCGATACTATCAGAAGATTCGACT 341694 Query 137365 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411 || | ||| | ||||||||||| | || |||||||| |||||||| Sbjct 341693 TCTAAAGTAATTGTCTTGCCGGTAAGAGTCTTTACGAAGATTTGCAT 341647 Score = 87.8 bits (96), Expect = 2e-12 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244 || || || | ||| | || || |||| |||||||||||||| |||||||| || Sbjct 342343 CCACCACGGAGACGGAGGACCAAGTGAAGAGTAGATTCTTTTTGGATGTTGTAGTCNNNN 342284 Query 137245 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 137304 | || | ||||| |||||||||||||| | || ||||||||||| || ||||| Sbjct 342283 AGAGTACGGCCATCTTCAAGTTGTTTACCAGCGAAAATAAGACGTTGCTGGTCAGGAGGA 342224 Query 137305 ATGCCTTCTTTGTC 137318 || ||||| ||||| Sbjct 342223 ATACCTTCCTTGTC 342210 >seq27 Length=327670 Score = 102 bits (112), Expect = 8e-17 Identities = 103/134 (77%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244 || || || | ||| | ||| || |||| |||||||| ||||| ||||||||||| ||| Sbjct 85924 CCACCACGAAGACGGAGAACCAAGTGAAGGGTAGATTCCTTTTGAATGTTGTAATCACTC 85865 Query 137245 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 137304 | || | |||||||||||||||||| || | || |||||||| ||||| ||||| Sbjct 85864 AAGGTACGACCGTCTTCGAGTTGTTTACCGGCGAAAATGAGACGTTGTTGATCAGGAGGG 85805 Query 137305 ATGCCTTCTTTGTC 137318 || ||||| || || Sbjct 85804 ATACCTTCCTTATC 85791 >seq47 Length=189370 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/213 (69%), Gaps = 11/213 (5%) Strand=Plus/Minus Query 150410 AAATAGTACATGCCGGTTTTGAGGCCGCGCTTCCAACCGTACATGTGCACCGACGCCATT 150469 |||||||||||||| || || || || |||||| | || | ||||| || | || | Sbjct 108704 AAATAGTACATGCCAGTCTTTAGTCCCTTCTTCCAGGCATAAAAGTGCATAGAAGTCAAT 108645 Query 150470 TTAGGCAAAGTAGGGTTTGCCA-TGTACACGTTGAACGATTGACTTTGATCGATAAATGC 150528 || | |||||| |||| | || | ||| || | |||||| ||| || ||||| || Sbjct 108644 TT-GCCAAAGTTTGGTTCGGCAGTAAACAAATTCATAGATTGAGATTGGTCAATAAAGGC 108586 Query 150529 TCCCCTGTCTGCTGCCATTTCAATCATATATTTTCCATTGTTCTCCCAAATTTCCCAGAT 150588 ||| || || || ||||| ||||| ||| | | |||| |||| ||||| | Sbjct 108585 TCCTCTATCAGCGGCCATGTCAATAATA----GTTCTTTGT-----GAAATCTCCCACAC 108535 Query 150589 TGTCATGTACAGCTTTTTTAGATTGTCGGGAAT 150621 ||| |||| |||||||| |||| || ||||| Sbjct 108534 GGTCTTGTATAGCTTTTTGAGATCATCAGGAAT 108502 >seq17 Length=565816 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/213 (69%), Gaps = 11/213 (5%) Strand=Plus/Minus Query 150410 AAATAGTACATGCCGGTTTTGAGGCCGCGCTTCCAACCGTACATGTGCACCGACGCCATT 150469 |||||||||||||| || || | || |||||| | || | ||||| || | || | Sbjct 415978 AAATAGTACATGCCAGTCTTTAATCCCTTCTTCCAGGCATAAAAGTGCATAGAGGTCAGT 415919 Query 150470 TTAGGCAAAGTAGGGTTTGCCA-TGTACACGTTGAACGATTGACTTTGATCGATAAATGC 150528 || | |||||| |||| | || | ||| || | |||||| ||| |||||||| || Sbjct 415918 TT-GCCAAAGTTTGGTTCGGCAGTAAACAAATTCATAGATTGAGATTGGTCGATAAAAGC 415860 Query 150529 TCCCCTGTCTGCTGCCATTTCAATCATATATTTTCCATTGTTCTCCCAAATTTCCCAGAT 150588 ||| || || || ||||| ||||| ||| | | |||| |||| ||||| | Sbjct 415859 TCCTCTATCAGCGGCCATGTCAATAATA----GTTCTTTGT-----GAAATCTCCCATAC 415809 Query 150589 TGTCATGTACAGCTTTTTTAGATTGTCGGGAAT 150621 ||| |||| |||||||| |||| || ||||| Sbjct 415808 TGTTTTGTATAGCTTTTTGAGATCATCAGGAAT 415776 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 488535535975200