Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizopus_20microsporus_20[genbank_20GCA_5F900000135.1_202014-11-26] 1,386 sequences; 49,591,775 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq1 190 4e-43 seq4 179 7e-40 seq27 122 2e-22 seq9 120 6e-22 seq225 100 6e-16 >seq1 Length=2399970 Score = 190 bits (210), Expect = 4e-43 Identities = 182/233 (78%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || | | ||| || || ||||| |||||||||||||| || || || || |||| Sbjct 341875 TACCACCACGGAGACGGAGGACCAAGTGAAGAGTAGATTCTTTTTGGATGTTGTAGTCAG 341816 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | ||| | | || || || |||||||| ||||||||||| ||||| ||||| || |||| Sbjct 341815 AGAGAGTACGGCCATCCTCGAGTTGTTTACCAGCAAAGATAAGTCTCTGTTGGTCAGGAG 341756 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || ||||||||||||||||||||| || |||||||| || ||||| || ||| | Sbjct 341755 GGATACCTTCCTTATCTTGAATCTTTTGCTTGACATTTTCGATACTATCAGAAGATTCGA 341696 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATTATT 82814 |||| ||||| || |||||||| || | |||||||| || || |||||| || Sbjct 341695 CTTCTAAAGTAATTGTCTTGCCGGTAAGAGTCTTTACGAAGATTTGCATTTTT 341643 Score = 174 bits (192), Expect = 3e-38 Identities = 168/216 (78%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 82595 ACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACC 82654 ||| ||||| | ||| |||||||||||||| || || ||||||||| | | | | ||| Sbjct 342560 ACGAAGAACCAGGTGAAGAGTAGATTCTTTTTGAATGTTATAATCACTCAAAGTACGACC 342501 Query 82655 GTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTT 82714 |||||| |||||||| ||||| || || || | |||||| || ||||| || |||||||| Sbjct 342500 GTCTTCGAGTTGTTTACCAGCGAAAATGAGACGTTGTTGGTCAGGAGGGATACCTTCCTT 342441 Query 82715 ATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTAT 82774 ||||||||||||| || ||||||||||| |||| || || |||||||| || || Sbjct 342440 ATCTTGAATCTTTTGCTTGACATTTTCAATACTATCGGAAGACTCAACTTCCAAGGTGAT 342381 Query 82775 CGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 ||||| || || | ||||| ||||| || ||||| Sbjct 342380 GGTCTTACCAGTAAGAGTCTTGACAAAGATTTGCAT 342345 Score = 109 bits (120), Expect = 1e-18 Identities = 121/163 (74%), Gaps = 0/163 (0%) Strand=Plus/Minus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || | | ||| || || ||||| |||||||||||||| || || || || || Sbjct 342345 TACCACCACGGAGACGGAGGACCAAGTGAAGAGTAGATTCTTTTTGGATGTTGTAGTCNN 342286 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 ||| | | || ||||| |||||||| ||||| || || || | ||| || || |||| Sbjct 342285 NNAGAGTACGGCCATCTTCAAGTTGTTTACCAGCGAAAATAAGACGTTGCTGGTCAGGAG 342226 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAAT 82744 | || |||||||| ||||| |||||| || |||||||| || Sbjct 342225 GAATACCTTCCTTGTCTTGGATCTTTTGCTTGACATTTTCGAT 342183 >seq4 Length=1094480 Score = 179 bits (198), Expect = 7e-40 Identities = 179/232 (77%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || | | ||| || || ||||| ||||||||||| || || || ||||| || Sbjct 349661 TACCACCACGGAGACGAAGGACCAAGTGAAGAGTAGATTCCTTTTGGATGTTATAGTCGC 349602 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 |||| | | || ||||| |||||||| ||||||||||| || | ||||||||| |||| Sbjct 349601 TTAGAGTACGGCCATCTTCGAGTTGTTTACCAGCAAAGATGAGACGTTGTTGATCAGGAG 349542 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || |||||||| |||||||||||| ||||||||| || || || ||| || ||| | Sbjct 349541 GAATACCTTCCTTGTCTTGAATCTTTTGTTTTACATTGTCGATAGTGTCAGAAGATTCAA 349482 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATTAT 82813 |||| ||||| || ||||| || || | ||||| ||||| || ||||| || Sbjct 349481 CTTCTAAAGTAATTGTCTTTCCAGTAAGTGTCTTGACAAAGATTTGCATGAT 349430 >seq27 Length=327670 Score = 122 bits (134), Expect = 2e-22 Identities = 129/170 (76%), Gaps = 0/170 (0%) Strand=Plus/Minus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || | | ||| ||||| ||||| || |||||||| || || || || |||||| Sbjct 85926 TACCACCACGAAGACGGAGAACCAAGTGAAGGGTAGATTCCTTTTGAATGTTGTAATCAC 85867 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | | | ||||||||| |||||||| || || || || || | ||||||||| |||| Sbjct 85866 TCAAGGTACGACCGTCTTCGAGTTGTTTACCGGCGAAAATGAGACGTTGTTGATCAGGAG 85807 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCA 82751 | || |||||||||||||| |||||| || ||||| ||||| || ||| Sbjct 85806 GGATACCTTCCTTATCTTGGATCTTTTGCTTGACATTGTCAATGGTGTCA 85757 >seq9 Length=817392 Score = 120 bits (132), Expect = 6e-22 Identities = 128/169 (76%), Gaps = 0/169 (0%) Strand=Plus/Plus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || | | ||| ||||||||||| ||||||||||| || || || || || || Sbjct 168557 TACCACCACGAAGACGGAGAACTAAGTGGAGAGTAGATTCCTTTTGGATGTTGTAGTCGC 168616 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | | | ||||||||| |||||||| || |||||||| || | |||||| || |||| Sbjct 168617 TCAAGGTACGACCGTCTTCGAGTTGTTTACCGGCAAAGATAAGACGTTGTTGGTCAGGAG 168676 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATC 82750 | || |||||||| |||||||||||| || || || ||||| || || Sbjct 168677 GAATACCTTCCTTGTCTTGAATCTTTTGCTTGACGTTGTCAATGGTGTC 168725 >seq225 Length=43411 Score = 100 bits (110), Expect = 6e-16 Identities = 142/197 (72%), Gaps = 2/197 (1%) Strand=Plus/Plus Query 82615 TAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGTTTTCCAG 82674 ||||||| | || || ||||| ||| ||| | ||| | ||| |||||||| |||| Sbjct 3270 TAGATTCACTTTGGATGTTATATTCACTCAGAGTATGACCATTTTCGAGTTGTTTGCCAG 3329 Query 82675 CAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTT- 82733 ||||||||| | |||||||| ||| || || ||||||| |||||||| ||||||||| Sbjct 3330 CAAAGATTAAACGTTGTTGATTTGGCGGAATGTCTTCCTTTTCTTGAAT-TTTGCTTTTC 3388 Query 82734 ACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAACGTC 82793 ||| | |||| |||||| | || ||||| || | | | | || | | ||| Sbjct 3389 ACAATATCAACAGTATCAGATGAGTCGACTTCTAACAAAACTGCCGTTCCAGCAAGTGTC 3448 Query 82794 TTTACAAATATCTGCAT 82810 || |||||||| ||||| Sbjct 3449 TTGACAAATATTTGCAT 3465 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981809764589854