Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizopus_20microsporus_20[genbank_20GCA_5F900000135.1_202014-11-26] 1,386 sequences; 49,591,775 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq1 105 6e-18 seq47 86.0 6e-12 seq27 86.0 6e-12 >seq1 Length=2399970 Score = 105 bits (116), Expect = 6e-18 Identities = 144/199 (72%), Gaps = 4/199 (2%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGA--GTCCTCGAGCTGCTTGC 133521 || || ||||| || || || ||||| | || || |||| ||| ||||| || || | Sbjct 342541 GTAGATTCTTTTTGAATGTTATAATCACTCAAAGT--ACGACCGTCTTCGAGTTGTTTAC 342484 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | ||| ||||||| || || ||||| |||||||| |||||||| || |||||||||| Sbjct 342483 CAGCGAAAATGAGACGTTGTTGGTCAGGAGGGATACCTTCCTTATCTTGAATCTTTTGCT 342424 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 ||| | |||| | |||| | ||| || || | ||||| ||| || || || |||| Sbjct 342423 TGACATTTTCAATACTATCGGAAGACTCAACTTCCAAGGTGATGGTCTTACCAGTAAGAG 342364 Query 133642 TTTTTACGAAAATCTGCAT 133660 | || || || || ||||| Sbjct 342363 TCTTGACAAAGATTTGCAT 342345 >seq47 Length=189370 Score = 86.0 bits (94), Expect = 6e-12 Identities = 392/615 (64%), Gaps = 9/615 (1%) Strand=Plus/Plus Query 149145 ACGCGCTTCATAAACAGATCGGGCACCCAGAGCGCGTACATGAGGTCGCGCGCCTTGCAG 149204 || |||| ||| || ||||| || | |||||| || || | || || || || || Sbjct 152936 ACACGCTGCATGAAAAGATCAGGAATCCAGAGAGCATAGAACAGATCACGAGCTCTGATT 152995 Query 149205 TCTTCGGCGCCCATGTTGCGGCGCAGGTTGAGCACGCTGAATATGTCCGCGTGCCACGGC 149264 || || ||| | ||| || | || | | | |||| || || || ||||| || Sbjct 152996 TCGTCTTTGCCAAAGTTTTTTCGTAAGTCTAAAAAGGTGAAAATATCTGCATGCCAGGGT 153055 Query 149265 TCAATGTACACCGCGAGCGCGCCCTTGCGCTTG---CCGCCCTGGTCGACGTGGCGCACC 149321 || | ||||| |||| |||||| ||||| ||||| || ||||| | || || Sbjct 153056 TCCAAGTACATTGCGAATGCGCCCGGACGCTTATTACCGCCTTGATCGACATAACGAGCC 153115 Query 149322 ATGTTGTTAAACACTCGAACCATAGGTTCAAT-GCCACTGGCAGTG-CCGTTAGTAGAGC 149379 | ||||| || || || | ||| || |||| | | | | ||| ||||| ||| | Sbjct 153116 GTATTGTTGAAAACACGGAGCATGGG--CAATAGTCCGTTGGAGTAACCGTTGGTACCGG 153173 Query 149380 TAATGCGACTGCCGCGCGCTCGCACTTTGTGCACGTTGACGCCGATGCCGCC-GCCGTAC 149438 |||| || | || || | ||||| | ||| | ||| || || || || || | Sbjct 153174 CAATGTATGATCCACTAGCACGAATGTTGTGAATGTTCAAGCCAATACCACCTGCTGT-C 153232 Query 149439 TTTGAGATGGCCGCGCAGTCGCCGAGCGTCGAGTAGATGCCCTCGATGCTGTCGCGCTTC 149498 || ||||| || ||| ||||||| ||||| || ||||| || |||| Sbjct 153233 TTGGAGATTTGAGCACAGATTTTGAGCGTCTCATAGATACCTTCGATCGAATCTTCCTTC 153292 Query 149499 ATGGTCAGCAGAAAGCACGAGCACATTTGCGGAAAACGCGTGCCGGCCGCGAACATGGTG 149558 ||||| |||| ||||| || |||| || ||| | | ||||| || || | || Sbjct 153293 ATGGTGAGCAAGAAGCAAGAAGACATCTGGGGACGAGGTGTGCCTGCATTAAATAGAGTA 153352 Query 149559 GGGCTGGCGTGTGTAAAATATTTCTGGCTCATCATCTCGTACGACTCGAGCACGCGGTCC 149618 || || ||||||||||| ||| | | ||||| | ||| | ||| | | || Sbjct 153353 GGACTAGCGTGTGTAAAGTATCTTTCAGACATCAAGTTGTATGTCTCAATAGCTGCATCA 153412 Query 149619 ATGTCATCGCCATGGATGCCTATGGCGACGCGCATCAGCATATGCTGCGGTCGCTCCGCC 149678 || || |||||||| || || || || ||||| | || ||| || || || || || Sbjct 153413 ATATCGGTTCCATGGATACCGATCGCAACACGCATAATCAAATGTTGAGGACGTTCAGCA 153472 Query 149679 ACTTTGTTTCCAATTTTGAGCAAGTAGCCGTTTTCTAGTGTCTTGTAGCCAAAGTACTTG 149738 | ||| |||| ||||| | ||| ||| || || ||| | |||||| | ||| Sbjct 153473 ATCTTGCCGTCAATCTTGAGGAGGTAAGAACGTTCGAGGGTTTTGAAACCAAAGAAGTTG 153532 Query 149739 TAGTCAAAGTCGCGG 149753 || | || || ||| Sbjct 153533 TACTTGAAATCACGG 153547 >seq27 Length=327670 Score = 86.0 bits (94), Expect = 6e-12 Identities = 109/148 (74%), Gaps = 4/148 (3%) Strand=Plus/Minus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGA--GTCCTCGA 133512 || || | ||| || || || || || |||||||| | || || |||| ||| |||| Sbjct 85903 AAGTGAAGGGTAGATTCCTTTTGAATGTTGTAATCACTCAAGGT--ACGACCGTCTTCGA 85846 Query 133513 GCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGA 133572 | || || || ||| ||||||| || || || || |||||||| |||||||| || || Sbjct 85845 GTTGTTTACCGGCGAAAATGAGACGTTGTTGATCAGGAGGGATACCTTCCTTATCTTGGA 85786 Query 133573 TCTTTTGCTTGAGCTGCTCAACCGTGTC 133600 |||||||||||| | |||| ||||| Sbjct 85785 TCTTTTGCTTGACATTGTCAATGGTGTC 85758 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483412424734640