Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizopus_20microsporus_20[genbank_20GCA_5F900000135.1_202014-11-26] 1,386 sequences; 49,591,775 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq47 159 8e-34 seq107 122 2e-22 seq204 87.8 4e-12 seq39 87.8 4e-12 seq2 87.8 4e-12 >seq47 Length=189370 Score = 159 bits (176), Expect = 8e-34 Identities = 461/705 (65%), Gaps = 17/705 (2%) Strand=Plus/Minus Query 110307 TTTGGTTTCAAAACTCTTGAACGTGCTTATTTACTTCGTGTCAATGGCGAGATCATTGAA 110366 |||||||||||||| || |||||| |||| | || | | ||| |||| |||| Sbjct 153525 TTTGGTTTCAAAACCCTCGAACGTTCTTACCTCCTCAAGATTGACGGCAAGATTGCTGAA 153466 Query 110367 CGTCCTCAACACATGTTTCTTCGTGTTGCGATTGGTATTCATGGACATGATATTAAAGCT 110426 ||||||||||| || || | ||||||||||| ||||| |||||| |||||| | || Sbjct 153465 CGTCCTCAACATTTGATTATGCGTGTTGCGATCGGTATCCATGGAACCGATATTGATGCA 153406 Query 110427 GTTATTGAATGTTA-----TGATGTATTAAGTAAAAAGA-AAGCTATTCATGCTACTCCT 110480 | |||||| || |||||| | ||||| | || || |||| |||| Sbjct 153405 GCTATTGAGACATACAACTTGATGTCT------GAAAGATACTTTACACACGCTAGTCCT 153352 Query 110481 ACCCTATTTAACGCAGGAACTAATGGAGGACAATTGGCTTCTTGCTTTCTTCTAGGAATT 110540 || |||||||| ||||| || | | || || |||||||||| | || || Sbjct 153351 ACTCTATTTAATGCAGGCACACCTCGTCCCCAGATGTCTTCTTGCTTCTTGCTCACCATG 153292 Query 110541 AACGATGATTCTATTGAAGGTATTTATGATGCTCTTAAAGAAACTGCTCTTATTTCTAAA 110600 || || ||||| || |||||||| ||||| | || ||| ||||| || || || Sbjct 153291 AAGGAAGATTCGATCGAAGGTATCTATGAGACGCTCAAAATCTGTGCTCAAATCTCCAAG 153232 Query 110601 AACTCTGGAGGAATTGGTATTCACGTTCATGATATTCGCTCAAAAGGAGCAAATATCG-C 110659 | | || || ||||| | || |||| | ||||| | | ||| || | || | | Sbjct 153231 ACAGCAGGTGGTATTGGCTTGAACATTCACAACATTCGTGCTAGTGGATCATACATTGCC 153172 Query 110660 AACAGCGAAGGGTGCTTCAACTGGACTTGTTCCAATGTTAAGAGTCTTCAACGACACTGC 110719 | | | || | || |||| ||||| | || ||| | | || |||||| | || || Sbjct 153171 GGTACCAACGGTTACTCCAAC-GGACTATTGCCCATGCTCCGTGTTTTCAACAATACGGC 153113 Query 110720 AAAATATGTGAATCAAGGTGG---TAAGAGAAATGGCTCATTTGCTATCTATCTCGAACC 110776 ||||| ||||||| || |||| | ||| |||| || || || | ||||| Sbjct 153112 TCGTTATGTCGATCAAGGCGGTAATAAGCGTCCGGGCGCATTCGCAATGTACTTGGAACC 153053 Query 110777 TTGGCATTCAGATATATTTGAATTCTTAGAACTTCGTAAAAATCAAGGATTTGAAGAACA 110836 |||||| ||||||| || || ||||| | || ||||| || || ||| Sbjct 153052 CTGGCATGCAGATATTTTCACCTTTTTAGACTTACGAAAAAACTTTGGCAAAGACGAAAT 152993 Query 110837 AAGAGCACGTGATTTATTTTATGCAATGTGGATTTCAGATTTATTCATGAAACGTGTTCA 110896 ||||| |||||| | || ||||| | |||||| | ||| | |||||| | ||||| Sbjct 152992 CAGAGCTCGTGATCTGTTCTATGCTCTCTGGATTCCTGATCTTTTCATGCAGCGTGTCAG 152933 Query 110897 AGAAAATGGCATGTGGTCTCTTATGTGTCCTCATCGTTCTCCTGGTCTATCTGATGTATA 110956 ||| ||| |||||||| | ||||| || ||||||| || ||| | | Sbjct 152932 AGACGGTGGTGATTGGTCTCTGTTTTGTCCCAATGAAGCTCCTGGATTACATGAAATCTG 152873 Query 110957 TGGAAAAGAGTTTGAAGACCTTTACGAAAAATATGAAAAAGAAGG 111001 || | ||||||| | || || |||||||| ||| ||||| Sbjct 152872 GGGTGACGAGTTTGTTGCTCTCTATGAAAAATACGAACGTGAAGG 152828 Score = 84.2 bits (92), Expect = 5e-11 Identities = 113/157 (72%), Gaps = 3/157 (2%) Strand=Plus/Plus Query 110653 ATATCGCAACAGCGAAGGGTGCTTCAACTGGACTTGTTCCAATGTTAAGAGTCTTCAACG 110712 |||||||| | | || ||| | || | ||| | |||||||| | |||||||| || | Sbjct 107057 ATATCGCAGGAACAAATGGTACCTCCAATGGCATCATTCCAATGCTCAGAGTCTTTAATG 107116 Query 110713 ACACTGCAAAATATGTGAATCAAGG---TGGTAAGAGAAATGGCTCATTTGCTATCTATC 110769 ||||||| | ||||| ||||| |||||| | || || |||||| ||||| Sbjct 107117 ACACTGCTCGCTTTGTGACACAAGGAGGTGGTAAACGCAACGGTAACTTTGCTGTCTATA 107176 Query 110770 TCGAACCTTGGCATTCAGATATATTTGAATTCTTAGA 110806 | |||||||||||| ||| |||| |||||||| || Sbjct 107177 TAGAACCTTGGCATGTCGATGTATTCGAATTCTTGGA 107213 >seq107 Length=77526 Score = 122 bits (134), Expect = 2e-22 Identities = 355/546 (65%), Gaps = 12/546 (2%) Strand=Plus/Minus Query 131468 TATAAGAAATCTGTTGCGGCCTTCTGGACTGTTGAAGAGATCGATATGACCAAAGATATT 131527 ||||||||| ||| || |||| ||||| | |||||| |||||| ||| ||| ||| || Sbjct 40564 TATAAGAAAGCTGAAGCTTCCTTTTGGACAGCTGAAGAAATCGATTTGAGCAAGGATCTT 40505 Query 131528 GATGATTGGGAAAAATTAACCTTGAATGAAAAAGAT------TTTGTTTCCAAAGTTCTT 131581 ||||||||||||| | ||| ||||| || ||| | || || | Sbjct 40504 CATGATTGGGAAAACAAGA---TGACCGAAAACGAACGCTTCTTTATCTCTCGCGTCTTG 40448 Query 131582 GCATTCTTCGCCGGAAGTGATGGCATTGTTATTGAAAATCTTGTTATTAATTTCATTCAA 131641 || ||||| || || ||||||||||||| |||||| | ||| || || | | Sbjct 40447 GCCTTCTTTGCTGGTTCAGATGGCATTGTTAATGAAAACTTGGTTCAAAACTTTTGTGAT 40388 Query 131642 GAAATTGATATTCCTGAAGTAACATCGTTCTACACATTTCAAGCCGCTGTTGAATCTATT 131701 ||| | | |||||||||| | || ||||| |||||| | ||||| ||| Sbjct 40387 GAAGTCAAGATTCCTGAAGCTAAATGTTTCTATGGCTTTCAAATCATGATTGAAAACATT 40328 Query 131702 CATAGCGAGATGTATTCATTATTGATTGAGAGTCTTGTTAAAAATGAAGATGATAAAAAT 131761 || || | || | |||||||| | | | | ||| || | | || ||| | Sbjct 40327 CACGCAGAAACTTACAGTCTTTTGATTGACACTTATATCAAAGATAACCAAGAGAAAGAA 40268 Query 131762 AAATTATTTGATGCTGTAAATAAATTTCCTGCAATTAAAAAGAAAGCAGAATGGGCTATT 131821 | | ||| |||| | | | | ||| || |||| || || || ||||| | Sbjct 40267 ATGCTCTTTTCTGCTATTGACACTATCCCTTGTATCAAAAGAAAGGCTGATTGGGCCTTC 40208 Query 131822 AAATGGATTCAAGATGATTCCGCTAATTTTTCTACAAGACTTGTAGCTTTTGCTTGTGTT 131881 || |||||| | | || | |||| || | ||||| || |||||| ||| Sbjct 40207 AAGTGGATTTCCTCTAA---CGGTTCTTTTGCTGAGCGTCTTGTTGCCTTTGCTGCTGTC 40151 Query 131882 GAAGGTATATTCTTTTCAGGTGCTTTCTGTGCTATCTTTTGGCTTAAGAAGCGTGGATTG 131941 |||||||| ||||| || ||| | || | | || |||||||| ||||| ||||| ||| Sbjct 40150 GAAGGTATCTTCTTCTCTGGTTCCTTTGCTTCCATTTTTTGGCTCAAGAAACGTGGTTTG 40091 Query 131942 ATGCCTGGACTCTCATTGTCCAATCAATTCATCTCGAGAGATGAAGCATTGCATACTGAA 132001 |||||||| | |||| |||| |||| |||| | ||||||| | |||||||| Sbjct 40090 ATGCCTGGTTTGACATTCAGCAATGAATTGATCTGTCGTGATGAAGGCCTTCATACTGAC 40031 Query 132002 TTTGCT 132007 |||||| Sbjct 40030 TTTGCT 40025 >seq204 Length=48612 Score = 87.8 bits (96), Expect = 4e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 148318 ACCCTATCTGGGGATCGAACCCAGAATCTTCCGCTTAGAAGGCGGACGCGATATCCAATT 148377 |||| || |||| |||||||| ||||||||||||||||||||||||| ||||||||| Sbjct 13884 ACCCAATGCGGGGGTCGAACCCGCAATCTTCCGCTTAGAAGGCGGACGCCGTATCCAATT 13825 Query 148378 TCGCCAATAGGGC 148390 | |||||| |||| Sbjct 13824 TGGCCAATCGGGC 13812 >seq39 Length=203748 Score = 87.8 bits (96), Expect = 4e-12 Identities = 154/222 (69%), Gaps = 2/222 (1%) Strand=Plus/Plus Query 72169 ACTTTGCCAAACACAACGTGTTTGTTATTTAAATGTGGTTGAGGTGCAAGTGTAATGAAG 72228 ||||| |||||||| || || ||| || |||||||| ||| || |||||| ||| Sbjct 62703 ACTTTACCAAACACGACATGCTTGCCATCCAAATGTGGAGTAGGAACAGTTGTAATAAAG 62762 Query 72229 AATTGCGAGTTATTTGAATCAGGACCCGAGTTAGCCATAGAAACCAAACCTGCTTCTGAA 72288 ||||| || ||||| |||| || | ||| ||||| || | || || || Sbjct 62763 AATTGAGATCCATTTGTTCCAGGGCCAGCGTTTGCCATGGATAATAAGAATGGTTTGTCG 62822 Query 72289 TGCTTTAATAAGAAATTCTCATCTTCAAAAGTTTCTCCATATATACTTTGACCTGAGCTT 72348 ||||||||| || || ||||||||||| |||| ||||| ||| || ||| | Sbjct 62823 TGCTTTAATTCAAAGTTTTCATCTTCAAACTTTTCACCATAAATAGATTCACCGCCAGTA 62882 Query 72349 CCATCA-AAGTTCACAATATCACCTCCTTGAACCATAAAATT 72389 || | | || | || |||||| ||||||||||||||||| Sbjct 62883 CCGTTACCAGCT-GTAAAATCACCACCTTGAACCATAAAATT 62923 >seq2 Length=1834001 Score = 87.8 bits (96), Expect = 4e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 148318 ACCCTATCTGGGGATCGAACCCAGAATCTTCCGCTTAGAAGGCGGACGCGATATCCAATT 148377 |||| || |||| |||||||| ||||||||||||||||||||||||| ||||||||| Sbjct 284409 ACCCAATGCGGGGGTCGAACCCGCAATCTTCCGCTTAGAAGGCGGACGCCGTATCCAATT 284350 Query 148378 TCGCCAATAGGGC 148390 | |||||| |||| Sbjct 284349 TGGCCAATCGGGC 284337 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186791724429946