Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizopus_20microsporus_20[genbank_20GCA_5F900000135.1_202014-11-26] 1,386 sequences; 49,591,775 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq17 116 9e-21 seq4 111 4e-19 seq1 111 4e-19 seq47 107 5e-18 seq9 95.1 3e-14 >seq17 Length=565816 Score = 116 bits (128), Expect = 9e-21 Identities = 176/248 (71%), Gaps = 2/248 (1%) Strand=Plus/Plus Query 173107 GCGTCCTTGTAGACGATGAAGGGCATACCAACCTCCGCTTGAGCCACCAAAATGTGGTGC 173166 || ||||| |||| ||||| || |||| ||||| ||||||| |||||||| | | Sbjct 455479 GCATCCTTATAGAGTATGAACGGATTACCTGTCTCCGTTTGAGCCTCCAAAATGGCATAC 455538 Query 173167 CAAAGTTCTTGGGCTTTTACGGTAGTTCTCGCTCTTCCTTCTTTTTCGTATCTCTCATAG 173226 || || | ||| || || | || ||| ||||||||||| ||||||| | |||||| Sbjct 455539 CACAGCTTTTGAGCCTTGATTGTTTCTCTAGCTCTTCCTTCACGTTCGTATTTTTCATAG 455598 Query 173227 AGGTCTTCGAAATCCTTCCCGTAAATTTCGTCAAGACCGGGAGCTTCCTTCGGACAAAAG 173286 || | | || || | || ||||||| | | || ||||| || || |||||||| Sbjct 455599 AGAGCAACAAACTCATCACCCCAAATTTCATGTAATCCAGGAGCCTCATTGGGACAAAAC 455658 Query 173287 AGACTCCAATTTCCATCGGTCTC-GACCCTCTTCATGAAGAGGTCGGAAGTCCAAATCGC 173345 ||| ||||| ||| | ||||| ||| | || ||||||||| || | | |||| | || Sbjct 455659 AGAGACCAATCACCA-CCGTCTCTGACACGCTGCATGAAGAGATCAGGAATCCAGAGAGC 455717 Query 173346 GTAGAACA 173353 ||||||| Sbjct 455718 ATAGAACA 455725 >seq4 Length=1094480 Score = 111 bits (122), Expect = 4e-19 Identities = 145/201 (72%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 || || ||| ||| || || || ||||| || || ||||| ||||| ||| ||||||| Sbjct 349436 CAAATCTTTGTCAAGACACTTACTGGAAAGACAATTACTTTAGAAGTTGAATCTTCTGAC 349495 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || |||| ||||| |||||||||||||| || ||||| ||| || || ||| Sbjct 349496 ACTATCGACAATGTAAAACAAAAGATTCAAGACAAGGAAGGTATTCCTCCTGATCAACAA 349555 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | || ||||| || || || || | |||||||| | ||| | ||| || ||| || Sbjct 349556 CGTCTCATCTTTGCTGGTAAACAACTCGAAGATGGCCGTACTCTAAGCGACTATAACATC 349615 Query 206353 CAGAAAGAGTCTACTCTTCAC 206373 || || || |||||||||||| Sbjct 349616 CAAAAGGAATCTACTCTTCAC 349636 >seq1 Length=2399970 Score = 111 bits (122), Expect = 4e-19 Identities = 138/189 (73%), Gaps = 0/189 (0%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || || || || || || || ||||| ||||| ||| |||||| | ||||| Sbjct 341662 AAGACTCTTACCGGCAAGACAATTACTTTAGAAGTCGAATCTTCTGATAGTATCGAAAAT 341721 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||||||||||||||||| || ||||| || || ||| || ||||||||||| Sbjct 341722 GTCAAGCAAAAGATTCAAGATAAGGAAGGTATCCCTCCTGACCAACAGAGACTTATCTTT 341781 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || || || || | || ||||| | ||| | | || |||||| |||| ||||| ||| Sbjct 341782 GCTGGTAAACAACTCGAGGATGGCCGTACTCTCTCTGACTACAACATCCAAAAAGAATCT 341841 Query 206365 ACTCTTCAC 206373 ||||||||| Sbjct 341842 ACTCTTCAC 341850 Score = 105 bits (116), Expect = 2e-17 Identities = 154/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 || || ||| ||| || || || || || || ||||| |||||||| || ||| || Sbjct 342348 CAAATCTTTGTCAAGACTCTTACTGGTAAGACCATCACCTTGGAAGTTGAGTCTTCCGAT 342407 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 | | ||| || ||||||||||||||||| || ||||| || || ||| ||| Sbjct 342408 AGTATTGAAAATGTCAAGCAAAAGATTCAAGATAAGGAAGGTATCCCTCCTGACCAACAA 342467 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | || || ||||| || || || | ||||| || | |||||| ||||| ||| | Sbjct 342468 CGTCTCATTTTCGCTGGTAAACAACTCGAAGACGGTCGTACTTTGAGTGATTATAACATT 342527 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 206390 || ||||| |||||||||||||| ||| | | ||||| Sbjct 342528 CAAAAAGAATCTACTCTTCACCTGGTTCTTCGTCTTCG 342565 Score = 89.7 bits (98), Expect = 1e-12 Identities = 101/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 206237 TCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGAC 206296 ||||| || ||||||||||| ||||| || ||||| ||| || ||| ||| | | Sbjct 342184 TCGAAAATGTCAAGCAAAAGATCCAAGACAAGGAAGGTATTCCTCCTGACCAGCAACGTC 342243 Query 206297 TTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGA 206356 |||| ||||| || || || | |||||||| | ||| | || |||||| |||| | Sbjct 342244 TTATTTTCGCTGGTAAACAACTTGAAGATGGCCGTACTCTNNNNGACTACAACATCCAAA 342303 Query 206357 AAGAGTCTACTCTTCAC 206373 |||| |||||||||||| Sbjct 342304 AAGAATCTACTCTTCAC 342320 >seq47 Length=189370 Score = 107 bits (118), Expect = 5e-18 Identities = 174/248 (70%), Gaps = 2/248 (1%) Strand=Plus/Plus Query 173107 GCGTCCTTGTAGACGATGAAGGGCATACCAACCTCCGCTTGAGCCACCAAAATGTGGTGC 173166 || ||||| |||| ||||| || |||| ||||| |||||| |||||||| | | Sbjct 152732 GCATCCTTATAGAGTATGAACGGATTACCTGTCTCCGTTTGAGCTTCCAAAATGGCATAC 152791 Query 173167 CAAAGTTCTTGGGCTTTTACGGTAGTTCTCGCTCTTCCTTCTTTTTCGTATCTCTCATAG 173226 || || | ||| || || | || ||| ||||||||||| ||||||| | |||||| Sbjct 152792 CATAGCTTTTGAGCCTTGATTGTTTCTCTAGCTCTTCCTTCACGTTCGTATTTTTCATAG 152851 Query 173227 AGGTCTTCGAAATCCTTCCCGTAAATTTCGTCAAGACCGGGAGCTTCCTTCGGACAAAAG 173286 || | | || || | || | ||||| | | || |||||||| || |||||||| Sbjct 152852 AGAGCAACAAACTCGTCACCCCAGATTTCATGTAATCCAGGAGCTTCATTGGGACAAAAC 152911 Query 173287 AGACTCCAATTTCCATCGGTCTC-GACCCTCTTCATGAAGAGGTCGGAAGTCCAAATCGC 173345 ||| ||||| ||| | ||||| ||| | || |||||| || || | | |||| | || Sbjct 152912 AGAGACCAATCACCA-CCGTCTCTGACACGCTGCATGAAAAGATCAGGAATCCAGAGAGC 152970 Query 173346 GTAGAACA 173353 ||||||| Sbjct 152971 ATAGAACA 152978 >seq9 Length=817392 Score = 95.1 bits (104), Expect = 3e-14 Identities = 121/167 (72%), Gaps = 0/167 (0%) Strand=Plus/Minus Query 206224 AGTTCTGACACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCG 206283 ||||| ||||| | || || ||||||||||||||||| || ||||| ||| || Sbjct 168731 AGTTCCGACACCATTGACAACGTCAAGCAAAAGATTCAAGACAAGGAAGGTATTCCTCCT 168672 Query 206284 GACGCTCAAAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGAT 206343 ||| ||| | |||||||| ||||| || || | ||||| || | || ||| ||| Sbjct 168671 GACCAACAACGTCTTATCTTTGCCGGTAAACAACTCGAAGACGGTCGTACCTTGAGCGAC 168612 Query 206344 TACAACGTCCAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 206390 |||||| |||| || || |||||||| ||| | ||| | | ||||| Sbjct 168611 TACAACATCCAAAAGGAATCTACTCTCCACTTAGTTCTCCGTCTTCG 168565 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181799813078506