Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizopus_20microsporus_20[genbank_20GCA_5F900000135.1_202014-11-26] 1,386 sequences; 49,591,775 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq1 111 1e-19 seq17 107 2e-18 seq9 102 8e-17 seq47 100 3e-16 seq27 98.7 9e-16 >seq1 Length=2399970 Score = 111 bits (122), Expect = 1e-19 Identities = 141/194 (73%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 || |||||||||||||| || || |||| ||||| |||||||| |||||||| | Sbjct 342538 GATTCTTTTTGAATGTTATAATCACTCAAAGTACGACCGTCTTCGAGTTGTTTACCAGCG 342479 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 | || ||||| ||||| || ||||| || ||||| ||||| ||| ||||| || | Sbjct 342478 AAAATGAGACGTTGTTGGTCAGGAGGGATACCTTCCTTATCTTGAATCTTTTGCTTGACA 342419 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | ||| | | |||||| | ||| ||||| | || | || |||||||| ||||| || Sbjct 342418 TTTTCAATACTATCGGAAGACTCAACTTCCAAGGTGATGGTCTTACCAGTAAGAGTCTTG 342359 Query 132110 ATGAAAATCTGCAT 132123 | || || ||||| Sbjct 342358 ACAAAGATTTGCAT 342345 Score = 98.7 bits (108), Expect = 9e-16 Identities = 138/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 || |||||||| ||||||||||| | ||||| ||| ||||| |||||||| | | Sbjct 341840 GATTCTTTTTGGATGTTGTAGTCAGAGAGAGTACGGCCATCCTCGAGTTGTTTACCAGCA 341781 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| || | |||||| || ||||| || ||||| ||||| ||| ||||| || | Sbjct 341780 AAGATAAGTCTCTGTTGGTCAGGAGGGATACCTTCCTTATCTTGAATCTTTTGCTTGACA 341721 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | ||| | | |||| | | || ||||| | || | || || || || ||||| ||| Sbjct 341720 TTTTCGATACTATCAGAAGATTCGACTTCTAAAGTAATTGTCTTGCCGGTAAGAGTCTTT 341661 Query 132110 ATGAAAATCTGCAT 132123 | ||| || ||||| Sbjct 341660 ACGAAGATTTGCAT 341647 >seq17 Length=565816 Score = 107 bits (118), Expect = 2e-18 Identities = 407/626 (65%), Gaps = 17/626 (3%) Strand=Plus/Plus Query 147791 GCATAAACAGATCCGGCACCCACAGCGCGTACATAAGATCGCGCGCTTTGCAATCCTCGG 147850 |||| || ||||| || | ||| || || || | |||||||| ||| || || || Sbjct 455690 GCATGAAGAGATCAGGAATCCAGAGAGCATAGAACAGATCGCGAGCTCTGATTTCGTCTT 455749 Query 147851 CGCCCATGTTGCGTTTCAAATTAAGCACGCTATAGATGTCGGCGTGCCAGGGTTCAATGT 147910 ||| | ||| | ||||| | | | | | ||||| || ||||||||||| | || Sbjct 455750 TGCCAAAGTTTTTTCGCAAATCTAAAAAGGTGAAAATGTCTGCATGCCAGGGTTCCAAGT 455809 Query 147911 AGACGGCCA--GCGC----ACCTTTACGCTTTCCGCCCTGGTCGACATGGCGCACCATGT 147964 | | || | |||| || |||| || ||||| || ||||||| || || | | Sbjct 455810 ACATTGCGAATGCGCCCGGACGTTTA---TTACCGCCTTGATCGACATAACGAGCCGTAT 455866 Query 147965 TGTTAAACACGCGCACCATGGGTTCCAGGCCGCTCGCAGTG-CCGTTGGTGGAATTGATC 148023 |||| || || || | |||||| | ||| | | ||| ||||||||| || Sbjct 455867 TGTTGAAAACACGGAGCATGGGCAGTAATCCGTTGG-AGTAACCGTTGGTGCCGGCAATA 455925 Query 148024 T-TGCTGCCGCGGGCTCGCACTTCGTGCACGTTAACGCCAATGCCGCC-GCCGTACTTTG 148081 | || | || | || || | | ||| | ||| | |||||||||||| || || ||| | Sbjct 455926 TATGAT-CCACTAGCACGAATGTTGTGAATGTTCAAGCCAATGCCGCCTGCTGT-CTTGG 455983 Query 148082 ATATGGCAGCGCAATCGCCCAATGTCGTGTAGATGCCGTCGATGCTGTCGTTTTTGACGC 148141 | || ||| || | ||| ||||| || ||||| || | || | | Sbjct 455984 AGATTTGAGCACAGATTTTGAGCGTCTCATAGATACCTTCGATCGAATCTTCCTTCATGG 456043 Query 148142 CAAGCAAAAAACACGAACACATTTGCGGAATCCGCGTTCCCGCCGAGAAAAGGGTGGGAC 148201 ||||| || || ||| ||||||| ||| | || || || || || || |||| Sbjct 456044 TGAGCAAGAAGCAAGAAGACATTTGGGGACGAGGTGTGCCTGCATTAAATAGAGTAGGAC 456103 Query 148202 TCGCGTGCGTAAACAATTTTTGACTCATCATGCGATACGTCTCAATAGCGTCTTCGATGT 148261 | ||||| || || || ||| ||||| | || ||||||||||| | || || | Sbjct 456104 TAGCGTGTGTGAAGTATCTTTCGGACATCAAGTTGTATGTCTCAATAGCTGCATCAATAT 456163 Query 148262 CGTCGCCGTGAATGCCCAGCGCGACGCGCATGAGCATGTGCTGTGGTCGTTCGGCAA-CT 148320 || || || || || | || || ||||||| || || || || ||||| |||| || Sbjct 456164 CGGTTCCATGGATACCGATTGCAACACGCATGATCAAATGTTGAGGACGTTCAGCAATCT 456223 Query 148321 TGATTGTTGATCTTGAGAAGATATCCATTTTCGAGGGTTTTGTAACCAAAGTACTTGTAA 148380 || || ||||||||||| || | |||||||||||| |||||||| | ||||| Sbjct 456224 TG-CCGTCAATCTTGAGAAGGTAAGAACGCTCGAGGGTTTTGAAACCAAAGAAGTTGTAC 456282 Query 148381 TCAAAATCTAGCTCGTAAGCGATGGC 148406 | ||||| | || || |||||| Sbjct 456283 TTGAAATCACGGTCATAGATGATGGC 456308 >seq9 Length=817392 Score = 102 bits (112), Expect = 8e-17 Identities = 92/116 (79%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 || || ||||| |||||||||||||||| |||||| |||||||| |||||||||| | Sbjct 168592 GATTCCTTTTGGATGTTGTAGTCGCTCAAGGTACGACCGTCTTCGAGTTGTTTACCGGCA 168651 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTT 132045 |||| ||||| ||||| || ||||| || ||||| || || ||| ||||| || Sbjct 168652 AAGATAAGACGTTGTTGGTCAGGAGGAATACCTTCCTTGTCTTGAATCTTTTGCTT 168707 >seq47 Length=189370 Score = 100 bits (110), Expect = 3e-16 Identities = 182/264 (69%), Gaps = 2/264 (1%) Strand=Plus/Plus Query 148144 AGCAAAAAACACGAACACATTTGCGGAATCCGCGTTCCCGCCGAGAAAAGGGTGGGACTC 148203 ||||| || || ||| |||| || ||| | || || || || || || ||||| Sbjct 153299 AGCAAGAAGCAAGAAGACATCTGGGGACGAGGTGTGCCTGCATTAAATAGAGTAGGACTA 153358 Query 148204 GCGTGCGTAAACAATTTTTGACTCATCATGCGATACGTCTCAATAGCGTCTTCGATGTCG 148263 ||||| ||||| || ||| | ||||| | || ||||||||||| | || || ||| Sbjct 153359 GCGTGTGTAAAGTATCTTTCAGACATCAAGTTGTATGTCTCAATAGCTGCATCAATATCG 153418 Query 148264 TCGCCGTGAATGCCCAGCGCGACGCGCATGAGCATGTGCTGTGGTCGTTCGGCAA-CTTG 148322 || || || || | ||| || ||||| | || || || || ||||| |||| |||| Sbjct 153419 GTTCCATGGATACCGATCGCAACACGCATAATCAAATGTTGAGGACGTTCAGCAATCTTG 153478 Query 148323 ATTGTTGATCTTGAGAAGATATCCATTTTCGAGGGTTTTGTAACCAAAGTACTTGTAATC 148382 || |||||||| || || | ||||||||||||| |||||||| | ||||| | Sbjct 153479 -CCGTCAATCTTGAGGAGGTAAGAACGTTCGAGGGTTTTGAAACCAAAGAAGTTGTACTT 153537 Query 148383 AAAATCTAGCTCGTAAGCGATGGC 148406 ||||| | || || |||||| Sbjct 153538 GAAATCACGGTCATAGATGATGGC 153561 >seq27 Length=327670 Score = 98.7 bits (108), Expect = 9e-16 Identities = 92/117 (79%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 131914 AACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTC 131973 |||||| || | | | || || |||||||||||||| || |||| |||||| ||||| Sbjct 85907 AACCAAGTGAAGGGTAGATTCCTTTTGAATGTTGTAATCACTCAAGGTACGACCGTCTTC 85848 Query 131974 GAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATC 132030 ||| |||||||||| | || ||||| |||||||| ||||| || ||||| ||||| Sbjct 85847 GAGTTGTTTACCGGCGAAAATGAGACGTTGTTGATCAGGAGGGATACCTTCCTTATC 85791 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476602942710960