Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizopus_20microsporus_20[genbank_20GCA_5F900000135.1_202014-11-26] 1,386 sequences; 49,591,775 total letters Query= NC_026268.1 Length=139132 Score E Sequences producing significant alignments: (Bits) Value seq4 111 1e-19 seq1 105 6e-18 seq27 93.3 4e-14 seq17 91.5 1e-13 seq47 87.8 2e-12 >seq4 Length=1094480 Score = 111 bits (122), Expect = 1e-19 Identities = 153/214 (71%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 25170 ACAACATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAG 25229 ||| ||||||| | ||||| || ||| | || ||||| | || || | ||||| ||| Sbjct 349428 ACATCATGCAAATCTTTGTCAAGACACTTACTGGAAAGACAATTACTTTAGAAGTTGAAT 349487 Query 25230 CCAACGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCG 25289 | || |||||||| | ||||||||||| ||| || || || ||||| || || | Sbjct 349488 CTTCTGACACTATCGACAATGTAAAACAAAAGATTCAAGACAAGGAAGGTATTCCTCCTG 349547 Query 25290 ATCAGCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATT 25349 |||| ||| | ||||| | | || |||||||||||||||| | | | | ||||| | Sbjct 349548 ATCAACAACGTCTCATCTTTGCTGGTAAACAACTCGAAGATGGCCGTACTCTAAGCGACT 349607 Query 25350 ACAATATTCAAAAAGAATCCACCATTCATTTAGT 25383 | || || ||||| ||||| || |||| || || Sbjct 349608 ATAACATCCAAAAGGAATCTACTCTTCACTTGGT 349641 >seq1 Length=2399970 Score = 105 bits (116), Expect = 6e-18 Identities = 145/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | ||||| || || | || || || | ||||| | ||||| || | | Sbjct 342345 ATGCAAATCTTTGTCAAGACTCTTACTGGTAAGACCATCACCTTGGAAGTTGAGTCTTCC 342404 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 |||| ||| || | || || ||||| ||| ||||| || ||||| || || || || Sbjct 342405 GATAGTATTGAAAATGTCAAGCAAAAGATTCAAGATAAGGAAGGTATCCCTCCTGACCAA 342464 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 ||| | ||||||| || || |||||||||||||| | | | | | | || ||||| || Sbjct 342465 CAACGTCTCATTTTCGCTGGTAAACAACTCGAAGACGGTCGTACTTTGAGTGATTATAAC 342524 Query 25355 ATTCAAAAAGAATCCACCATTCA 25377 |||||||||||||| || |||| Sbjct 342525 ATTCAAAAAGAATCTACTCTTCA 342547 Score = 95.1 bits (104), Expect = 1e-14 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 25172 AACATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCC 25231 || |||||| | || ||||| || | ||||| || | || || | ||||||||| | Sbjct 341644 AAAATGCAAATCTTCGTAAAGACTCTTACCGGCAAGACAATTACTTTAGAAGTCGAATCT 341703 Query 25232 AACGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGAT 25291 |||| |||||| | || || ||||| ||| ||||| || ||||| || || || Sbjct 341704 TCTGATAGTATCGAAAATGTCAAGCAAAAGATTCAAGATAAGGAAGGTATCCCTCCTGAC 341763 Query 25292 CAGCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTAC 25351 || || ||||| || | | || ||||||||||| |||| | | | || || ||| Sbjct 341764 CAACAGAGACTTATCTTTGCTGGTAAACAACTCGAGGATGGCCGTACTCTCTCTGACTAC 341823 Query 25352 AATATTCAAAAAGAATCCACCATTCATTTAGT 25383 || || ||||||||||| || |||| || || Sbjct 341824 AACATCCAAAAAGAATCTACTCTTCACTTGGT 341855 >seq27 Length=327670 Score = 93.3 bits (102), Expect = 4e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 25250 GTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAGCAAAGACTCATTTAC 25309 || || ||||| || ||||| || ||||| || || ||||| ||| | ||||||| | Sbjct 85773 GTCAAGCAAAAGATCCAAGATAAGGAAGGTATCCCTCCTGATCAACAACGTCTCATTTTC 85832 Query 25310 GGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAATATTCAAAAAGAATCC 25369 | ||| |||||||||||||| | | | | | || |||||||| |||||||| ||||| Sbjct 85833 GCCGGTAAACAACTCGAAGACGGTCGTACCTTGAGTGATTACAACATTCAAAAGGAATCT 85892 Query 25370 ACCATTCATTTAGT 25383 ||| |||| || || Sbjct 85893 ACCCTTCACTTGGT 85906 >seq17 Length=565816 Score = 91.5 bits (100), Expect = 1e-13 Identities = 155/222 (70%), Gaps = 2/222 (1%) Strand=Plus/Minus Query 136650 GATTGTATTCGCGGCAGGTTTAGTTCTCAGATAGTACATGCCCGTCTTTAAACCCTTCTC 136709 ||||| || | |||||| ||| ||| | |||||||||||| |||||||| ||||||| Sbjct 416006 GATTGCATCAACTGCAGGTCTAGATCTTAAATAGTACATGCCAGTCTTTAATCCCTTCTT 415947 Query 136710 CCAGGAATAATTATGTATAGATGACAAAATTTTATAGCTCGGATCGGCCACGAAAAGATT 136769 ||||| |||| || ||||| | || | | || | || ||||| || | ||| Sbjct 415946 CCAGGCATAAAAGTGCATAGAGGTCAGTTTGCCAAAGTTTGGTTCGGCAGTAAACAAATT 415887 Query 136770 TAGCGATTGGCTCTGATCGATGTAAGGTCCGCGGTCTGCGGCCATGTTCAATAGTACTT- 136828 | ||||| || ||||| ||| ||| | || ||||||||| |||||| || || Sbjct 415886 CATAGATTGAGATTGGTCGATAAAAGCTCCTCTATCAGCGGCCATG-TCAATAATAGTTC 415828 Query 136829 TTTGCTTAATTTCCCAAGCGGTTTTAAAGAGCTCCTTGACAT 136870 |||| ||| ||||| | ||||| | |||| |||| || Sbjct 415827 TTTGTGAAATCTCCCATACTGTTTTGTATAGCTTTTTGAGAT 415786 >seq47 Length=189370 Score = 87.8 bits (96), Expect = 2e-12 Identities = 154/222 (69%), Gaps = 2/222 (1%) Strand=Plus/Minus Query 136650 GATTGTATTCGCGGCAGGTTTAGTTCTCAGATAGTACATGCCCGTCTTTAAACCCTTCTC 136709 ||||| || | |||||| ||| ||||| |||||||||||| ||||||| ||||||| Sbjct 108732 GATTGCATCAACTGCAGGTCTAGATCTCAAATAGTACATGCCAGTCTTTAGTCCCTTCTT 108673 Query 136710 CCAGGAATAATTATGTATAGATGACAAAATTTTATAGCTCGGATCGGCCACGAAAAGATT 136769 ||||| |||| || ||||| | ||| | | || | || ||||| || | ||| Sbjct 108672 CCAGGCATAAAAGTGCATAGAAGTCAATTTGCCAAAGTTTGGTTCGGCAGTAAACAAATT 108613 Query 136770 TAGCGATTGGCTCTGATCGATGTAAGGTCCGCGGTCTGCGGCCATGTTCAATAGTACTT- 136828 | ||||| || || || | | ||| | || ||||||||| |||||| || || Sbjct 108612 CATAGATTGAGATTGGTCAATAAAGGCTCCTCTATCAGCGGCCATG-TCAATAATAGTTC 108554 Query 136829 TTTGCTTAATTTCCCAAGCGGTTTTAAAGAGCTCCTTGACAT 136870 |||| ||| ||||| |||| || | |||| |||| || Sbjct 108553 TTTGTGAAATCTCCCACACGGTCTTGTATAGCTTTTTGAGAT 108512 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445086688739520