Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizopus_20microsporus_20[genbank_20GCA_5F900000135.1_202014-11-26] 1,386 sequences; 49,591,775 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq47 131 2e-24 seq17 131 2e-24 seq26 107 3e-17 seq25 86.0 9e-11 >seq47 Length=189370 Score = 131 bits (144), Expect = 2e-24 Identities = 183/257 (71%), Gaps = 0/257 (0%) Strand=Plus/Minus Query 259925 CCCACGCTCTTTAATGCCGGCACGCCGCGCCCGCAGAATTCGTCGTGCTTTCTGTTGGAC 259984 || || || |||||||| ||||| || || || |||| || || ||||| || | | Sbjct 153354 CCTACTCTATTTAATGCAGGCACACCTCGTCCCCAGATGTCTTCTTGCTTCTTGCTCACC 153295 Query 259985 ATGAAGGCCGATTCGATCGAGGGCATCTATGACACGCTCAAGCAGTGCGCGCTCATCTCC 260044 ||||||| ||||||||||| || |||||||| |||||||| || || | |||||| Sbjct 153294 ATGAAGGAAGATTCGATCGAAGGTATCTATGAGACGCTCAAAATCTGTGCTCAAATCTCC 153235 Query 260045 AAGGCGGCCGGCGGCATCGGTTTTGCCGCACACAAGGTGCGCGCCGCGGGCGCCTACGTG 260104 ||| | || || || || || || | ||||| | || || || | ||| | Sbjct 153234 AAGACAGCAGGTGGTATTGGCTTGAACATTCACAACATTCGTGCTAGTGGATCATACATT 153175 Query 260105 GCGGGCACCAACGGCCAGTCCAACGGCCTTGTGCCCATGCTTCGCGTTTTTAACGACACG 260164 || || |||||||| | |||||||| || |||||||||| || ||||| ||| | ||| Sbjct 153174 GCCGGTACCAACGGTTACTCCAACGGACTATTGCCCATGCTCCGTGTTTTCAACAATACG 153115 Query 260165 GCGCGCTACGTCGACCA 260181 || || || ||||| || Sbjct 153114 GCTCGTTATGTCGATCA 153098 >seq17 Length=565816 Score = 131 bits (144), Expect = 2e-24 Identities = 183/257 (71%), Gaps = 0/257 (0%) Strand=Plus/Minus Query 259925 CCCACGCTCTTTAATGCCGGCACGCCGCGCCCGCAGAATTCGTCGTGCTTTCTGTTGGAC 259984 || || || |||||||| ||||| || || || || | || || ||||| || | | Sbjct 456101 CCTACTCTATTTAATGCAGGCACACCTCGTCCCCAAATGTCTTCTTGCTTCTTGCTCACC 456042 Query 259985 ATGAAGGCCGATTCGATCGAGGGCATCTATGACACGCTCAAGCAGTGCGCGCTCATCTCC 260044 ||||||| ||||||||||| || |||||||| |||||||| || || | |||||| Sbjct 456041 ATGAAGGAAGATTCGATCGAAGGTATCTATGAGACGCTCAAAATCTGTGCTCAAATCTCC 455982 Query 260045 AAGGCGGCCGGCGGCATCGGTTTTGCCGCACACAAGGTGCGCGCCGCGGGCGCCTACGTG 260104 ||| | || |||||||| || || | ||||| | || || || | || | Sbjct 455981 AAGACAGCAGGCGGCATTGGCTTGAACATTCACAACATTCGTGCTAGTGGATCATATATT 455922 Query 260105 GCGGGCACCAACGGCCAGTCCAACGGCCTTGTGCCCATGCTTCGCGTTTTTAACGACACG 260164 || ||||||||||| | |||||||| | |||||||||| || ||||| ||| | ||| Sbjct 455921 GCCGGCACCAACGGTTACTCCAACGGATTACTGCCCATGCTCCGTGTTTTCAACAATACG 455862 Query 260165 GCGCGCTACGTCGACCA 260181 || || || ||||| || Sbjct 455861 GCTCGTTATGTCGATCA 455845 >seq26 Length=359709 Score = 107 bits (118), Expect = 3e-17 Identities = 171/244 (70%), Gaps = 6/244 (2%) Strand=Plus/Minus Query 724899 TACTCGTCCTTTATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCC 724958 ||||| || | ||||||||||| | ||||| || |||||| |||| | ||| Sbjct 58179 TACTCCTCTTACATCTACAAGGTCTTGAAGCAAGTCCACCCCGATACCGGT-----ATC- 58126 Query 724959 TCCAACAAGTCCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGC 725018 || |||||| ||||||| ||| ||||||| |||||||| || || | || || || | | Sbjct 58125 TCTAACAAGGCCATGTCCATCTTGAACTCCTTTGTCAATGATATCTTTGAACGTATTGCC 58066 Query 725019 ACCGAGGCCGGTCGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATC 725078 || || ||| |||| | ||||||||| ||| ||| | || || ||| Sbjct 58065 ACTGAAGCCTCCAAGTTGGCTGCTTACAACAAGCGTTCCACCATCTCTTCTCGTGAAATC 58006 Query 725079 CAGACCGCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGC 725138 || ||||| || || || ||| | | || ||||| |||| |||||||||||| || || Sbjct 58005 CAAACCGCTGTTCGTCTCATCCTCCCTGGTGAACTCGCCAAGCACGCCGTCTCTGAAGGT 57946 Query 725139 ACCA 725142 |||| Sbjct 57945 ACCA 57942 Score = 107 bits (118), Expect = 3e-17 Identities = 171/244 (70%), Gaps = 6/244 (2%) Strand=Plus/Plus Query 724899 TACTCGTCCTTTATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCC 724958 ||||| || | ||||||||||| | ||||| || |||||| |||| | ||| Sbjct 62956 TACTCCTCTTACATCTACAAGGTCTTGAAGCAAGTCCACCCCGATACCGGT-----ATC- 63009 Query 724959 TCCAACAAGTCCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGC 725018 || |||||| ||||||| ||| ||||||| |||||||| || || | || || || | | Sbjct 63010 TCTAACAAGGCCATGTCCATCTTGAACTCCTTTGTCAATGATATCTTTGAACGTATTGCC 63069 Query 725019 ACCGAGGCCGGTCGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATC 725078 || || ||| |||| | ||||||||| ||| ||| | || || ||| Sbjct 63070 ACTGAAGCCTCCAAGTTGGCTGCTTACAACAAGCGTTCCACCATCTCTTCTCGTGAAATC 63129 Query 725079 CAGACCGCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGC 725138 || ||||| || || || ||| | | || ||||| |||| |||||||||||| || || Sbjct 63130 CAAACCGCTGTTCGTCTCATCCTCCCTGGTGAACTCGCCAAGCACGCCGTCTCTGAAGGT 63189 Query 725139 ACCA 725142 |||| Sbjct 63190 ACCA 63193 >seq25 Length=399763 Score = 86.0 bits (94), Expect = 9e-11 Identities = 167/244 (68%), Gaps = 6/244 (2%) Strand=Plus/Minus Query 724899 TACTCGTCCTTTATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCC 724958 ||||| || | ||||||||||| | ||||| || ||||| || ||| || | Sbjct 289351 TACTCCTCTTACATCTACAAGGTCTTGAAGCAAGTTCACCCTGATAC---TGG--TAT-C 289298 Query 724959 TCCAACAAGTCCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGC 725018 ||||||||| ||||||| ||| ||||||| |||||||| || || | || || || | | Sbjct 289297 TCCAACAAGGCCATGTCCATCTTGAACTCTTTTGTCAATGATATCTTTGAACGTATTGCC 289238 Query 725019 ACCGAGGCCGGTCGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATC 725078 || || ||| |||| | ||||||||| ||| ||| | || || || Sbjct 289237 ACTGAAGCCTCCAAGTTGGCTGCTTACAACAAGCGTTCCACCATCTCTTCTCGTGAAATT 289178 Query 725079 CAGACCGCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGC 725138 || || || || || || || | | || ||||| |||| |||||| ||||| || || Sbjct 289177 CAAACTGCTGTTCGTCTCATTCTTCCTGGTGAACTCGCCAAGCACGCTGTCTCTGAAGGT 289118 Query 725139 ACCA 725142 |||| Sbjct 289117 ACCA 289114 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177677517752532