Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizopus_20microsporus_20[genbank_20GCA_5F900000135.1_202014-11-26] 1,386 sequences; 49,591,775 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq4 123 3e-23 seq1 111 2e-19 seq9 107 2e-18 seq27 98.7 1e-15 seq17 84.2 2e-11 >seq4 Length=1094480 Score = 123 bits (136), Expect = 3e-23 Identities = 169/236 (72%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || || | ||| || | || | ||| || || ||||||||||| ||||| ||||||| Sbjct 349659 CCACCACGGAGACGAAGGACCAAGTGAAGAGTAGATTCCTTTTGGATGTTATAGTCGCTT 349600 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | || | || ||||| ||||| || ||||| || | ||| || ||||| || || Sbjct 349599 AGAGTACGGCCATCTTCGAGTTGTTTACCAGCAAAGATGAGACGTTGTTGATCAGGAGGA 349540 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 || ||||| || |||||||| |||||||| || ||| | ||||| || ||||| || Sbjct 349539 ATACCTTCCTTGTCTTGAATCTTTTGTTTTACATTGTCGATAGTGTCAGAAGATTCAACT 349480 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATTTTGTTTTT 134722 || | |||||| || || || || | || || || || |||||||| ||| ||| Sbjct 349479 TCTAAAGTAATTGTCTTTCCAGTAAGTGTCTTGACAAAGATTTGCATGATGTATTT 349424 >seq1 Length=2399970 Score = 111 bits (122), Expect = 2e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 134505 ACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCG 134564 || ||||| || || ||||| ||||||||||| || || | | || || ||| ||| Sbjct 342553 ACCAGGTGAAGAGTAGATTCTTTTTGAATGTTATAATCACTCAAAGTACGACCGTCTTCG 342494 Query 134565 AGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGA 134624 || ||||| || || ||||| | ||| || || || || || || ||||| || |||||| Sbjct 342493 AGTTGTTTACCAGCGAAAATGAGACGTTGTTGGTCAGGAGGGATACCTTCCTTATCTTGA 342434 Query 134625 ATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTA 134684 || ||||| ||||| || | | ||||| || || || || | || ||||| ||| Sbjct 342433 ATCTTTTGCTTGACATTTTCAATACTATCGGAAGACTCAACTTCCAAGGTGATGGTCTTA 342374 Query 134685 CCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || | ||| || || || |||||||| Sbjct 342373 CCAGTAAGAGTCTTGACAAAGATTTGCAT 342345 Score = 109 bits (120), Expect = 6e-19 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || || | ||| || | || | ||| || || ||||| ||||| ||||||||||| Sbjct 341873 CCACCACGGAGACGGAGGACCAAGTGAAGAGTAGATTCTTTTTGGATGTTGTAGTCAGAG 341814 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | || | || ||||| ||||| || ||||| || | | ||| || || || || Sbjct 341813 AGAGTACGGCCATCCTCGAGTTGTTTACCAGCAAAGATAAGTCTCTGTTGGTCAGGAGGG 341754 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 || ||||| || |||||||| ||||| ||||| || | | || || ||||| || Sbjct 341753 ATACCTTCCTTATCTTGAATCTTTTGCTTGACATTTTCGATACTATCAGAAGATTCGACT 341694 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATTTT 134716 || | |||||| || || ||||| | ||| || ||||| ||||||||||| Sbjct 341693 TCTAAAGTAATTGTCTTGCCGGTAAGAGTCTTTACGAAGATTTGCATTTT 341644 >seq9 Length=817392 Score = 107 bits (118), Expect = 2e-18 Identities = 112/147 (76%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 134510 GTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCGAGCTG 134569 ||| || || ||||||||||| ||||||||||||| | ||| || ||| ||||| || Sbjct 168582 GTGGAGAGTAGATTCCTTTTGGATGTTGTAGTCGCTCAAGGTACGACCGTCTTCGAGTTG 168641 Query 134570 TTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTT 134629 ||| || ||||| || | ||| || || || || || || ||||| || |||||||| || Sbjct 168642 TTTACCGGCAAAGATAAGACGTTGTTGGTCAGGAGGAATACCTTCCTTGTCTTGAATCTT 168701 Query 134630 TTGTTTGACCGCGTCCAATGTGTCGGA 134656 ||| ||||| ||| | |||||||| Sbjct 168702 TTGCTTGACGTTGTCAATGGTGTCGGA 168728 >seq27 Length=327670 Score = 98.7 bits (108), Expect = 1e-15 Identities = 110/147 (75%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 134510 GTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCGAGCTG 134569 ||| || || |||||||||||||||||||| || | | ||| || ||| ||||| || Sbjct 85901 GTGAAGGGTAGATTCCTTTTGAATGTTGTAATCACTCAAGGTACGACCGTCTTCGAGTTG 85842 Query 134570 TTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTT 134629 ||| || || ||||| | ||| || ||||| || || || ||||| || ||||| || || Sbjct 85841 TTTACCGGCGAAAATGAGACGTTGTTGATCAGGAGGGATACCTTCCTTATCTTGGATCTT 85782 Query 134630 TTGTTTGACCGCGTCCAATGTGTCGGA 134656 ||| ||||| ||| | ||||| || Sbjct 85781 TTGCTTGACATTGTCAATGGTGTCAGA 85755 >seq17 Length=565816 Score = 84.2 bits (92), Expect = 2e-11 Identities = 139/198 (70%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 9079 CCTCAACACATTAAAGAGCTGTATAAAACCGTTTGGGAAATGAAGCAAAGCACGCTGATC 9138 |||||| || | ||||| || || || ||||| |||||||| ||| | || | || Sbjct 454691 CCTCAAAACTTGAAAGATCTCTACAAGACCGTCTGGGAAATCTCTCAACGTACCATCATT 454632 Query 9139 GGCATGGCTGCGGATAGAGGCGCTTTTATTGATCAGAGTCAATCTTTTAACGTGTTCGTA 9198 | ||||||||| ||| | || || | |||||| || |||||| ||| ||| | || | Sbjct 454631 GACATGGCTGCTGATCGTGGTGCGTATATTGACCAAAGTCAAAGTTTGAACATCTTTATG 454572 Query 9199 GCCGCACC-AACTTACGCTTTGATGTCCAGCATTCATTATTTAACTTGGAAAATGGGTTT 9257 || | ||| ||||| | | | | |||| || || | || |||| ||| ||| || Sbjct 454571 GCTGAACCCAACTTTGG-TAAGCTCACCAGTATGCACTTTTATGGTTGGCAAAAGGGATT 454513 Query 9258 AAAAACAGGCATGTACTA 9275 ||| ||||||||||| || Sbjct 454512 AAAGACAGGCATGTATTA 454495 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505389643972720