Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizopus_20microsporus_20[genbank_20GCA_5F900000135.1_202014-11-26] 1,386 sequences; 49,591,775 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq17 163 2e-35 seq47 158 1e-33 seq4 116 3e-21 seq1 114 1e-20 seq27 109 5e-19 seq9 84.2 2e-11 >seq17 Length=565816 Score = 163 bits (180), Expect = 2e-35 Identities = 424/639 (66%), Gaps = 13/639 (2%) Strand=Plus/Plus Query 131613 TGGGACACATTAGCGACCA--CACG-CCGT-TCTGTTCAACTCGCTTCATAAACAAATCC 131668 ||||||| | || ||||| ||| |||| |||| || |||| ||| || | ||| Sbjct 455648 TGGGACAAAACAGAGACCAATCACCACCGTCTCTG----ACACGCTGCATGAAGAGATCA 455703 Query 131669 GGCACCCATAACGCGTACAACAGATCTCTAGCTTTTTTCTCTTCTGTACCCATAAttttt 131728 || | ||| | || || |||||||| | |||| | | || ||| | || | ||||| Sbjct 455704 GGAATCCAGAGAGCATAGAACAGATCGCGAGCTCTGATTTCGTCTTTGCCAAAGTTTTTT 455763 Query 131729 ttCAAATTTAAAAAGTCCAAAATGTCCGCATGCCAGGGTTCCAAATACACTGCCATTGCG 131788 ||||| ||||||| |||||||| ||||||||||||||||| |||| ||| | |||| Sbjct 455764 CGCAAATCTAAAAAGGTGAAAATGTCTGCATGCCAGGGTTCCAAGTACATTGCGAATGCG 455823 Query 131789 CCTTTGCG---CTTACCGCCTTGATTAACATGACGAACCATGTTGTTGTATACGCGCAAC 131845 || || ||||||||||||| |||| |||| || | |||||| | || || | | Sbjct 455824 CCCGGACGTTTATTACCGCCTTGATCGACATAACGAGCCGTATTGTTGAAAACACGGAGC 455883 Query 131846 ATGGGCTCCAAACCGTTGGCGTTTCCATTGGTGCTCTTAATGTAGCTGCCATTGGCTCTG 131905 |||||| || ||||||| || || ||||||| ||| || ||| | || | Sbjct 455884 ATGGGCAGTAATCCGTTGGAGTAACCGTTGGTGCCGGCAATATATGATCCACTAGCACGA 455943 Query 131906 ATTTTGTGAACGTTGAGTCCAATACCTCC-GCCGTATTTAGAGATTAGTGCGCATTTGGT 131964 || ||||||| ||| | ||||| || || || || || |||||| | || || | | Sbjct 455944 ATGTTGTGAATGTTCAAGCCAATGCCGCCTGCTGT-CTTGGAGATTTGAGCACAGATTTT 456002 Query 131965 TAGAGTGTTATAGATACCTTCCACGCTGTCCGCGGCAATGTCGACTAAAAAGCAAGAGGA 132024 || || | |||||||||||| | || | ||| || || |||||||| || Sbjct 456003 GAGCGTCTCATAGATACCTTCGATCGAATCTTCCTTCATGGTGAGCAAGAAGCAAGAAGA 456062 Query 132025 CAACTGTTGGTGAAATGTGCCGGCTGAAAACAATGTGGGGCTGGCGTGTGTAAAAAGTTT 132084 || || | || |||||| || ||| | || || || |||||||| || | | Sbjct 456063 CATTTGGGGACGAGGTGTGCCTGCATTAAATAGAGTAGGACTAGCGTGTGTGAAGTATCT 456122 Query 132085 TTTGGCCATGCACCGATACGATTGTATAGCGGACTCGATATCGCCCAGATGTATGGTCAA 132144 || || ||| | || | | ||||| | || |||||| ||| || | Sbjct 456123 TTCGGACATCAAGTTGTATGTCTCAATAGCTGCATCAATATCGGTTCCATGGATACCGAT 456182 Query 132145 TGCGACCCGCATGTACATGTGTTGAATGCGCTCGGCCGTTTTGCCGTCGATTTTGATCAA 132204 ||| || |||||| || |||||| || || || | |||||||| || |||| | Sbjct 456183 TGCAACACGCATGATCAAATGTTGAGGACGTTCAGCAATCTTGCCGTCAATCTTGAGAAG 456242 Query 132205 ATAACCGTTTTCCAAAGTTTTGAAACCAAAATATTTGTA 132243 ||| || | |||||||||||||| | ||||| Sbjct 456243 GTAAGAACGCTCGAGGGTTTTGAAACCAAAGAAGTTGTA 456281 >seq47 Length=189370 Score = 158 bits (174), Expect = 1e-33 Identities = 326/476 (68%), Gaps = 17/476 (4%) Strand=Plus/Plus Query 131613 TGGGACACATTAGCGACCA--CACG-CCGT-TCTGTTCAACTCGCTTCATAAACAAATCC 131668 ||||||| | || ||||| ||| |||| |||| || |||| ||| || | ||| Sbjct 152901 TGGGACAAAACAGAGACCAATCACCACCGTCTCTG----ACACGCTGCATGAAAAGATCA 152956 Query 131669 GGCACCCATAACGCGTACAACAGATCTCTAGCTTTTTTCTCTTCTGTACCCATAAttttt 131728 || | ||| | || || |||||||| | |||| | | || ||| | || | | |||| Sbjct 152957 GGAATCCAGAGAGCATAGAACAGATCACGAGCTCTGATTTCGTCTTTGCCAA--AGTTTT 153014 Query 131729 ttC--AAATTTAAAAAGTCCAAAATGTCCGCATGCCAGGGTTCCAAATACACTGCCATTG 131786 ||| || | ||||||| ||||| || ||||||||||||||||| |||| ||| | || Sbjct 153015 TTCGTAAGTCTAAAAAGGTGAAAATATCTGCATGCCAGGGTTCCAAGTACATTGCGAATG 153074 Query 131787 CGCCTTTGCGC---TTACCGCCTTGATTAACATGACGAACCATGTTGTTGTATACGCGCA 131843 |||| ||| ||||||||||||| |||| |||| || | |||||| | || || | Sbjct 153075 CGCCCGGACGCTTATTACCGCCTTGATCGACATAACGAGCCGTATTGTTGAAAACACGGA 153134 Query 131844 ACATGGGCTCCAAACCGTTGGCGTTTCCATTGGTGCTCTTAATGTAGCTGCCATTGGCTC 131903 ||||||| | ||||||| || || ||||| | |||||| ||| | || | Sbjct 153135 GCATGGGCAATAGTCCGTTGGAGTAACCGTTGGTACCGGCAATGTATGATCCACTAGCAC 153194 Query 131904 TGATTTTGTGAACGTTGAGTCCAATACCTCC-GCCGTATTTAGAGATTAGTGCGCATTTG 131962 || ||||||| ||| | |||||||| || || || || |||||| | || || | Sbjct 153195 GAATGTTGTGAATGTTCAAGCCAATACCACCTGCTGT-CTTGGAGATTTGAGCACAGATT 153253 Query 131963 GTTAGAGTGTTATAGATACCTTCCACGCTGTCCGCGGCAATGTCGACTAAAAAGCAAGAG 132022 | || || | |||||||||||| | || | ||| || || |||||||| Sbjct 153254 TTGAGCGTCTCATAGATACCTTCGATCGAATCTTCCTTCATGGTGAGCAAGAAGCAAGAA 153313 Query 132023 GACAACTGTTGGTGAAATGTGCCGGCTGAAAACAATGTGGGGCTGGCGTGTGTAAA 132078 |||| ||| | || |||||| || ||| | || || || ||||||||||| Sbjct 153314 GACATCTGGGGACGAGGTGTGCCTGCATTAAATAGAGTAGGACTAGCGTGTGTAAA 153369 >seq4 Length=1094480 Score = 116 bits (128), Expect = 3e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCG 27098 ||||| || | ||||| || ||||| || || |||||||| | | || | |||||| Sbjct 349641 ACCAAGTGAAGAGTAGATTCCTTTTGGATGTTATAGTCGCTTAGAGTACGGCCATCTTCG 349582 Query 27099 AGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCG 27158 || |||||||| || | |||||||| |||||||| || || | ||| || || || Sbjct 349581 AGTTGTTTACCAGCAAAGATGAGACGTTGTTGATCAGGAGGAATACCTTCCTTGTCTTGA 349522 Query 27159 ATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTG 27218 ||||| | ||| | | || | |||||| | | ||||||||||| ||| || | || Sbjct 349521 ATCTTTTGTTTTACATTGTCGATAGTGTCAGAAGATTCAACTTCTAAAGTAATTGTCTTT 349462 Query 27219 CCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || || || || || |||||||||||||| Sbjct 349461 CCAGTAAGTGTCTTGACAAAGATTTGCAT 349433 >seq1 Length=2399970 Score = 114 bits (126), Expect = 1e-20 Identities = 144/198 (73%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 ||||| ||||||||||| || || || |||| | || |||||||||| |||||||| Sbjct 342541 GTAGATTCTTTTTGAATGTTATAATCACTCAAAGTACGACCGTCTTCGAGTTGTTTACCA 342482 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 ||| |||||||||| ||||| || || || | ||| || ||||| ||||| | || Sbjct 342481 GCGAAAATGAGACGTTGTTGGTCAGGAGGGATACCTTCCTTATCTTGAATCTTTTGCTTG 342422 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | |||| | | | || | | |||||||| | || || | || || || ||||| Sbjct 342421 ACATTTTCAATACTATCGGAAGACTCAACTTCCAAGGTGATGGTCTTACCAGTAAGAGTC 342362 Query 27231 TTCACAAAGATTTGCATA 27248 || ||||||||||||||| Sbjct 342361 TTGACAAAGATTTGCATA 342344 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCG 27098 ||||| || | ||||| |||||||| || |||||||| | | || | || ||| Sbjct 341855 ACCAAGTGAAGAGTAGATTCTTTTTGGATGTTGTAGTCAGAGAGAGTACGGCCATCCTCG 341796 Query 27099 AGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCG 27158 || |||||||| || | || || | |||||| || || || | ||| || ||||| Sbjct 341795 AGTTGTTTACCAGCAAAGATAAGTCTCTGTTGGTCAGGAGGGATACCTTCCTTATCTTGA 341736 Query 27159 ATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTG 27218 ||||| | || | |||| | | | || | | ||| ||||||| ||| || | ||| Sbjct 341735 ATCTTTTGCTTGACATTTTCGATACTATCAGAAGATTCGACTTCTAAAGTAATTGTCTTG 341676 Query 27219 CCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || || ||||| || || ||||||||||| Sbjct 341675 CCGGTAAGAGTCTTTACGAAGATTTGCAT 341647 >seq27 Length=327670 Score = 109 bits (120), Expect = 5e-19 Identities = 99/125 (79%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCG 27098 ||||| || | ||||| || |||||||| ||||| || |||| | | || |||||||| Sbjct 85906 ACCAAGTGAAGGGTAGATTCCTTTTGAATGTTGTAATCACTCAAGGTACGACCGTCTTCG 85847 Query 27099 AGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCG 27158 || |||||||||||| |||||||||| |||||||| || || | ||| || ||||| | Sbjct 85846 AGTTGTTTACCGGCGAAAATGAGACGTTGTTGATCAGGAGGGATACCTTCCTTATCTTGG 85787 Query 27159 ATCTT 27163 ||||| Sbjct 85786 ATCTT 85782 >seq9 Length=817392 Score = 84.2 bits (92), Expect = 2e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 ||||| || ||||| || ||||||||||||| | | || |||||||||| ||||||||| Sbjct 168589 GTAGATTCCTTTTGGATGTTGTAGTCGCTCAAGGTACGACCGTCTTCGAGTTGTTTACCG 168648 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATC 27154 || | || ||||| ||||| || || || | ||| || || || Sbjct 168649 GCAAAGATAAGACGTTGTTGGTCAGGAGGAATACCTTCCTTGTC 168692 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424927222061232