Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizopus_20microsporus_20[genbank_20GCA_5F900000135.1_202014-11-26] 1,386 sequences; 49,591,775 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq17 145 8e-30 seq47 127 2e-24 >seq17 Length=565816 Score = 145 bits (160), Expect = 8e-30 Identities = 312/462 (68%), Gaps = 6/462 (1%) Strand=Plus/Plus Query 79380 CTCCATGAAGAGGTCCGGGATCCACAGGGCCGTGAAGAGGTCGCGGCAACGCATCTCCTC 79439 || ||||||||| || || ||||| || || ||| || ||||| | || || || Sbjct 455688 CTGCATGAAGAGATCAGGAATCCAGAGAGCATAGAACAGATCGCGAGCTCTGATTTCGTC 455747 Query 79440 GTCGCCCTGGTTCAGACGCAGCTCGAGAAAGTCCATGATGTCGGCGTGCCACGGCTCCAG 79499 | ||| ||| |||| || | |||| | ||||| || ||||| || |||| Sbjct 455748 TTTGCCAAAGTTTTTTCGCAAATCTAAAAAGGTGAAAATGTCTGCATGCCAGGGTTCCAA 455807 Query 79500 ATAGATGGCGAACGAACCCTTGCGCTTGCCGCCGCCCTGGTTGACGTACCGGGCCGTGTT 79559 || || ||||| | ||| || || ||||| || | ||| || || ||||| || Sbjct 455808 GTACATTGCGAATGCGCCCGGACGTTTATTACCGCCTTGATCGACATAACGAGCCGTATT 455867 Query 79560 GTTGAAAACTCGGAGCATGGGCACGATGCCGTCGGCGACGCCGTTCGTCCCGTTGATTCG 79619 ||||||||| ||||||||||||| | |||| || | ||||| || ||| || Sbjct 455868 GTTGAAAACACGGAGCATGGGCAGTAATCCGTTGGAGTAACCGTTGGTGCCGGCAATATA 455927 Query 79620 TGTACCGCTCGCCCGAATGTTCGAGCA-GTGGATTCCGATGCCCCCGGACCACTTGGAGA 79678 || || || || |||||||| | | | || | || ||||| || | |||||||| Sbjct 455928 TGATCCACTAGCACGAATGTT-GTGAATGTTCAAGCCAATGCCGCCTGCTGTCTTGGAGA 455986 Query 79679 TGTGCGCGCACTCCTTGAGCGTCTCGTAGATGCCCTCGATCGAGTCGTCCTTCATAGCGA 79738 | || || || ||||||||||| ||||| || |||||||| || |||||||| | || Sbjct 455987 TTTGAGCACAGATTTTGAGCGTCTCATAGATACCTTCGATCGAATCTTCCTTCATGGTGA 456046 Query 79739 CCAGGAAGCAGCTCGACATCTGTGG--GTTGTTCGTACCGGCGTTGAAGAGGGTCGGCGT 79796 || |||||| ||||| || || | || || || || || || || || || | Sbjct 456047 GCAAGAAGCAAGAAGACATTTGGGGACGAGGT--GTGCCTGCATTAAATAGAGTAGGACT 456104 Query 79797 CGCGTGCGTGAAGAACTTTTGGCTCATCAGATCGTACGTCTC 79838 ||||| |||||| | ||| | ||||| | ||| ||||| Sbjct 456105 AGCGTGTGTGAAGTATCTTTCGGACATCAAGTTGTATGTCTC 456146 >seq47 Length=189370 Score = 127 bits (140), Expect = 2e-24 Identities = 250/365 (68%), Gaps = 6/365 (2%) Strand=Plus/Plus Query 79477 ATGTCGGCGTGCCACGGCTCCAGATAGATGGCGAACGAACCCTTGCGCTTGCCGCCGCCC 79536 || || || ||||| || |||| || || ||||| | ||| ||||| ||||| Sbjct 153038 ATATCTGCATGCCAGGGTTCCAAGTACATTGCGAATGCGCCCGGACGCTTATTACCGCCT 153097 Query 79537 TGGTTGACGTACCGGGCCGTGTTGTTGAAAACTCGGAGCATGGGCACGATGCCGTCGGCG 79596 || | ||| || || ||||| ||||||||||| ||||||||||||| | |||| || | Sbjct 153098 TGATCGACATAACGAGCCGTATTGTTGAAAACACGGAGCATGGGCAATAGTCCGTTGGAG 153157 Query 79597 ACGCCGTTCGTCCCGTTGATTCGTGTACCGCTCGCCCGAATGTTCGAGCA-GTGGATTCC 79655 ||||| || ||| || || || || || |||||||| | | | || | || Sbjct 153158 TAACCGTTGGTACCGGCAATGTATGATCCACTAGCACGAATGTT-GTGAATGTTCAAGCC 153216 Query 79656 GATGCCCCCGGACCACTTGGAGATGTGCGCGCACTCCTTGAGCGTCTCGTAGATGCCCTC 79715 || || || | ||||||||| || || || ||||||||||| ||||| || || Sbjct 153217 AATACCACCTGCTGTCTTGGAGATTTGAGCACAGATTTTGAGCGTCTCATAGATACCTTC 153276 Query 79716 GATCGAGTCGTCCTTCATAGCGACCAGGAAGCAGCTCGACATCTGTGG--GTTGTTCGTA 79773 |||||| || |||||||| | || || |||||| |||||||| || | || || Sbjct 153277 GATCGAATCTTCCTTCATGGTGAGCAAGAAGCAAGAAGACATCTGGGGACGAGGT--GTG 153334 Query 79774 CCGGCGTTGAAGAGGGTCGGCGTCGCGTGCGTGAAGAACTTTTGGCTCATCAGATCGTAC 79833 || || || || || || || | ||||| || ||| | ||| ||||| | ||| Sbjct 153335 CCTGCATTAAATAGAGTAGGACTAGCGTGTGTAAAGTATCTTTCAGACATCAAGTTGTAT 153394 Query 79834 GTCTC 79838 ||||| Sbjct 153395 GTCTC 153399 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548515296807840