Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizopus_20microsporus_20[genbank_20GCA_5F900000135.1_202014-11-26] 1,386 sequences; 49,591,775 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq47 140 4e-28 seq17 131 2e-25 seq107 109 6e-19 >seq47 Length=189370 Score = 140 bits (154), Expect = 4e-28 Identities = 311/462 (67%), Gaps = 6/462 (1%) Strand=Plus/Minus Query 53242 TGAGACGTACGACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAA 53301 |||||| ||| |||| ||| ||| |||||||| ||||| | || || || || || Sbjct 153400 TGAGACATACAACTTGATGTCTGAAAGATACTTTACACACGCTAGTCCTACTCTATTTAA 153341 Query 53302 CGCTGGTACGAATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTC 53361 || || || || || |||||||| |||||| || | | |||||||| || || Sbjct 153340 TGCAGGCACACCTCGTCCCCAGATGTCTTCTTGCTTCTTGCTCACCATGAAGGAAGATTC 153281 Query 53362 GATCGACGGCATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGG 53421 |||||| || ||||| ||||||||||| ||||| || ||||||||| | ||||| Sbjct 153280 GATCGAAGGTATCTATGAGACGCTCAAAATCTGTGCTCAAATCTCCAAGACAGCAGGTGG 153221 Query 53422 TATCGGTATCCAC-TGCTCGAACGTCCGTGCGAACGGCACACCAATCAAGGGGACGAACG 53480 ||| || | || | | | ||| | ||||| | || || || || || |||| Sbjct 153220 TATTGGCTTGAACATTCAC-AACATTCGTGCTAGTGGATCATACATTGCCGGTACCAACG 153162 Query 53481 GCGTCGCCGATGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCA 53540 | | || | ||| | |||| |||||||| || |||||||| ||||| || || ||| Sbjct 153161 GTTACTCCAACGGACTATTGCCCATGCTCCGTGTTTTCAACAATACGGCTCGTTATGTCG 153102 Query 53541 ACCAGGGTGGTGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCG 53600 | || || ||| ||||| ||| | ||||| || ||| | || || ||||| || | Sbjct 153101 ATCAAGGCGGTAATAAGCGTCCGGGCGCATTCGCAATGTACTTGGAACCCTGGCATGCAG 153042 Query 53601 ACATTATGGAGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGAT--GCGCTGCCG 53658 | ||| | ||| | || | || || || | || || || | ||| || Sbjct 153041 ATATTTTCACCTTTTTAGACTTACGAAAAAACTTTGGCAAAGACGAAATCAGAGCT--CG 152984 Query 53659 TGACCTGTTTACAGCTCTGTGGATTCCGGACCTCTTCATGCA 53700 ||| ||||| ||||| |||||||| || || |||||||| Sbjct 152983 TGATCTGTTCTATGCTCTCTGGATTCCTGATCTTTTCATGCA 152942 Score = 104 bits (114), Expect = 3e-17 Identities = 141/194 (73%), Gaps = 2/194 (1%) Strand=Plus/Plus Query 55726 TCTCAAGGAGATTTACCGGACGGTGTGGGAGATTCCACAGAAGAGTCTGATTGACATGAG 55785 |||||| || | ||| ||| |||||||||||| |||| | | | | ||||||||| Sbjct 108513 TCTCAAAAAGCTATACAAGACCGTGTGGGAGATTTCACAAAGAACTATTATTGACATGGC 108572 Query 55786 TGCTGATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAACATCTTCA-TGGAGAATC 55844 |||||| | || || | || ||||| || || ||| |||| | || | || ||| | Sbjct 108573 CGCTGATAGAGGAGCCTTTATTGACCAATCTCAATCTATGAATTTGTTTACTGCCGAACC 108632 Query 55845 CTTCACTGGCCAAGTTGAGCTCGATGCACTTTTACGGGTGGAAGAAGGGACTCAAGACGG 55904 | |||| || |||| || ||||||||||| | |||||||||||||| ||||| | Sbjct 108633 AAACTTTGGCAAA-TTGACTTCTATGCACTTTTATGCCTGGAAGAAGGGACTAAAGACTG 108691 Query 55905 GTATGTACTATCTG 55918 | ||||||||| || Sbjct 108692 GCATGTACTATTTG 108705 >seq17 Length=565816 Score = 131 bits (144), Expect = 2e-25 Identities = 309/462 (67%), Gaps = 6/462 (1%) Strand=Plus/Minus Query 53242 TGAGACGTACGACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAA 53301 |||||| ||| |||| ||| | ||| ||||| || ||||| | || || || || || Sbjct 456147 TGAGACATACAACTTGATGTCCGAAAGATACTTCACACACGCTAGTCCTACTCTATTTAA 456088 Query 53302 CGCTGGTACGAATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTC 53361 || || || || || || ||||| |||||| || | | |||||||| || || Sbjct 456087 TGCAGGCACACCTCGTCCCCAAATGTCTTCTTGCTTCTTGCTCACCATGAAGGAAGATTC 456028 Query 53362 GATCGACGGCATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGG 53421 |||||| || ||||| ||||||||||| ||||| || ||||||||| | || || Sbjct 456027 GATCGAAGGTATCTATGAGACGCTCAAAATCTGTGCTCAAATCTCCAAGACAGCAGGCGG 455968 Query 53422 TATCGGTATCCAC-TGCTCGAACGTCCGTGCGAACGGCACACCAATCAAGGGGACGAACG 53480 || || | || | | | ||| | ||||| | || || || || || |||| Sbjct 455967 CATTGGCTTGAACATTCAC-AACATTCGTGCTAGTGGATCATATATTGCCGGCACCAACG 455909 Query 53481 GCGTCGCCGATGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCA 53540 | | || | ||| | |||| |||||||| || |||||||| ||||| || || ||| Sbjct 455908 GTTACTCCAACGGATTACTGCCCATGCTCCGTGTTTTCAACAATACGGCTCGTTATGTCG 455849 Query 53541 ACCAGGGTGGTGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCG 53600 | || || ||| || || ||| | ||||| || ||| | || || ||||| || | Sbjct 455848 ATCAAGGCGGTAATAAACGTCCGGGCGCATTCGCAATGTACTTGGAACCCTGGCATGCAG 455789 Query 53601 ACATTATGGAGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGAT--GCGCTGCCG 53658 ||||| | ||| | || |||| || || | || || || | ||| || Sbjct 455788 ACATTTTCACCTTTTTAGATTTGCGAAAAAACTTTGGCAAAGACGAAATCAGAGCT--CG 455731 Query 53659 TGACCTGTTTACAGCTCTGTGGATTCCGGACCTCTTCATGCA 53700 || ||||| ||||| |||||||| || ||||||||||| Sbjct 455730 CGATCTGTTCTATGCTCTCTGGATTCCTGATCTCTTCATGCA 455689 Score = 109 bits (120), Expect = 6e-19 Identities = 267/402 (66%), Gaps = 2/402 (0%) Strand=Plus/Plus Query 53267 AAGTACTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTACGAATCACCCTCAGATG 53326 || |||||||| || || || || || |||||||||||||||| | | ||||| || Sbjct 414135 AAATACTTTACTCATGCTACACCTACATTGTTCAACGCTGGTACACCTAAACCTCAATTG 414194 Query 53327 TCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGGCATCTACGAGACGCTC 53386 || || |||||||| || ||||| || ||| ||||| ||||||||||| || || Sbjct 414195 TCTAGTTGCTTCCTTGTTCAAATGAAAGAGGACAGTATCGAAGGCATCTACGATACTATC 414254 Query 53387 AAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTATCCACTGCTCGAACG-T 53445 | |||||| | |||||||||| | || ||| | || | |||||| || | | Sbjct 414255 ACCACGTGTGCTCGTATCTCCAAGTCTGCTGGCGGTGTTGGCGT-TGCTGCTCAAAAGAT 414313 Query 53446 CCGTGCGAACGGCACACCAATCAAGGGGACGAACGGCGTCGCCGATGGAATCGTGCCTAT 53505 |||| ||| | ||| || || |||||| | || |||| || | || || Sbjct 414314 TCGTGGCTCTGGCTCTTATATCGCAGGAACAAACGGCACCTCCAATGGCATTATTCCAAT 414373 Query 53506 GCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGGTGGTGGGAAGCGCAAGGG 53565 |||| | ||||| || |||| || || | || | || || ||||| || ||||| || Sbjct 414374 GCTCAGAGTCTTTAATGACACTGCTCGCTTTGTGACACAAGGAGGTGGTAAACGCAACGG 414433 Query 53566 GTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTATGGAGTTTCTCGAGCTGCG 53625 || || |||| | || || ||||| | |||| | | || || | || |||| Sbjct 414434 TAACTTTGCTGTCTATATAGAACCTTGGCATGTCGACGTATTCGAATTCTTGGACTTGCG 414493 Query 53626 TCTGAATCAGGGTGACGAAGAGATGCGCTGCCGTGACCTGTT 53667 ||| | |||| || || |||||| || ||| |||| Sbjct 414494 CAAGAACAATGGTGCTGAGGAAATGCGCGCACGCGACTTGTT 414535 Score = 95.1 bits (104), Expect = 1e-14 Identities = 137/191 (72%), Gaps = 2/191 (1%) Strand=Plus/Plus Query 55726 TCTCAAGGAGATTTACCGGACGGTGTGGGAGATTCCACAGAAGAGTCTGATTGACATGAG 55785 |||||| || | ||| || || ||||||||| |||| | | | | ||||||||| Sbjct 415787 TCTCAAAAAGCTATACAAAACAGTATGGGAGATTTCACAAAGAACTATTATTGACATGGC 415846 Query 55786 TGCTGATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAACATCTTCA-TGGAGAATC 55844 |||||| | || || | |||||||| || || ||| |||| | || | || ||| | Sbjct 415847 CGCTGATAGAGGAGCTTTTATCGACCAATCTCAATCTATGAATTTGTTTACTGCCGAACC 415906 Query 55845 CTTCACTGGCCAAGTTGAGCTCGATGCACTTTTACGGGTGGAAGAAGGGACTCAAGACGG 55904 | |||| || | || ||| ||||||||||| | |||||||||||| | ||||| | Sbjct 415907 AAACTTTGGCAAACT-GACCTCTATGCACTTTTATGCCTGGAAGAAGGGATTAAAGACTG 415965 Query 55905 GTATGTACTAT 55915 | ||||||||| Sbjct 415966 GCATGTACTAT 415976 Score = 87.8 bits (96), Expect = 2e-12 Identities = 115/155 (74%), Gaps = 6/155 (4%) Strand=Plus/Minus Query 55775 ATTGACATGAGTGCTGATCGTGGTGCGTACATCGACC--AGTCCCAGTCTCTGAACATCT 55832 ||||||||| |||||||||||||||||| || |||| |||| || | ||||||||| Sbjct 454634 ATTGACATGGCTGCTGATCGTGGTGCGTATATTGACCAAAGTCAAAG--TTTGAACATCT 454577 Query 55833 TCATGG-AGAATCCTTCACTGGCCAAGTTGAGCTCGATGCACTTTTACGGGTGGAAGAAG 55891 | |||| ||| || | ||| ||| | | | ||||||||||| || ||| | ||| Sbjct 454576 TTATGGCTGAACCCAACTTTGG-TAAGCTCACCAGTATGCACTTTTATGGTTGGCAAAAG 454518 Query 55892 GGACTCAAGACGGGTATGTACTATCTGCGGACCCG 55926 ||| | ||||| || ||||| || || || || || Sbjct 454517 GGATTAAAGACAGGCATGTATTACCTCCGTACACG 454483 >seq107 Length=77526 Score = 109 bits (120), Expect = 6e-19 Identities = 197/288 (68%), Gaps = 0/288 (0%) Strand=Plus/Plus Query 74768 GCCTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTT 74827 ||||||||| | | ||||||||||| || | | |||||||| | ||||| || Sbjct 40043 GCCTTCATCACGACAGATCAATTCATTGCTGAATGTCAAACCAGGCATCAAACCACGTTT 40102 Query 74828 CTTCAACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGCCTTCGACACACGCAAA 74887 ||| | |||||| |||| | ||||||||| ||||||||| ||||||||| ||||| Sbjct 40103 CTTGAGCCAAAAAATGGAAGCAAAGGAACCAGAGAAGAAGATACCTTCGACAGCAGCAAA 40162 Query 74888 GGCGACAAGGCGTTGCGCGAACGGTGCATCGGAAGTCATCCAAGTCTGAGCCCATTCAGC 74947 ||| ||||| || | || || | | | || | ||||| | ||||| ||||| Sbjct 40163 GGCAACAAGACGCTCAGCAAAAGAACCGTTAGAGGAAATCCACTTGAAGGCCCAATCAGC 40222 Query 74948 TTTTCGTTTGACCGCAGGGACAGTATCGATCGCTTGGAAGAGGCTTGCCTTCTCTTCGGG 75007 |||| ||||| ||||| ||| || || || ||||| || | ||||||| | Sbjct 40223 CTTTCTTTTGATACAAGGGATAGTGTCAATAGCAGAAAAGAGCATTTCTTTCTCTTGGTT 40282 Query 75008 ATCCTTGACGAGCTTGTCAATCATAAGTGAGTACGTCTCCGAATGAAT 75055 ||| |||| ||||||||| ||| ||| || || | ||||| Sbjct 40283 ATCTTTGATATAAGTGTCAATCAAAAGACTGTAAGTTTCTGCGTGAAT 40330 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547206519482800