Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizopus_20microsporus_20[genbank_20GCA_5F900000135.1_202014-11-26] 1,386 sequences; 49,591,775 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq4 181 1e-40 seq1 181 1e-40 seq9 127 2e-24 seq17 105 8e-18 seq27 96.9 4e-15 seq225 93.3 5e-14 seq47 93.3 5e-14 >seq4 Length=1094480 Score = 181 bits (200), Expect = 1e-40 Identities = 178/230 (77%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 27403 ATAATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCA 27462 || |||||||||||||||||||| ||||| || ||||| |||||| | || ||||| || Sbjct 349430 ATCATGCAAATCTTTGTCAAGACACTTACTGGAAAGACAATTACTTTAGAAGTTGAATCT 349489 Query 27463 GGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGAC 27522 ||| | || | ||| | || || ||||| |||||||| || |||||||| || Sbjct 349490 TCTGACACTATCGACAATGTAAAACAAAAGATTCAAGACAAGGAAGGTATTCCTCCTGAT 349549 Query 27523 CAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTAT 27582 || || ||||| || ||||||||||| |||||||| |||| ||||| ||| |||||| Sbjct 349550 CAACAACGTCTCATCTTTGCTGGTAAACAACTCGAAGATGGCCGTACTCTAAGCGACTAT 349609 Query 27583 AATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 || ||||||||||||| |||||||| | ||| | ||||| || ||||| Sbjct 349610 AACATCCAAAAGGAATCTACTCTTCACTTGGTCCTTCGTCTCCGTGGTGG 349659 Score = 89.7 bits (98), Expect = 6e-13 Identities = 136/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||| ||||||||||| ||| | || | ||| ||| | | || || | ||| | Sbjct 349661 ATGCAAATATTTGTCAAGACACTTGCTGGAACGACAATTTCGTTAGAAGTCAACTCATCT 349720 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| | ||| | | |||| ||||||||| || | || | ||||| || | || Sbjct 349721 GATACCGTTGATATTGTGAAAAGTAAAATTCAAGAAAGAGAAGACATTCCGTCAAATCAA 349780 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || ||| |||| ||||| || || |||||||| ||| || ||| | || ||||| Sbjct 349781 CAACGTTTAATCTTTGCGGGCAAACAACTCGAAAATGGTCATACTTTGAATGAATATAAC 349840 Query 27586 GTCCAAAAGGAATC 27599 ||||||| ||||| Sbjct 349841 ATCCAAAATGAATC 349854 >seq1 Length=2399970 Score = 181 bits (200), Expect = 1e-40 Identities = 177/228 (78%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||||||||| || ||||| |||||||||||||| |||||| | || || || || Sbjct 341646 AATGCAAATCTTCGTAAAGACTCTTACCGGCAAGACAATTACTTTAGAAGTCGAATCTTC 341705 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 |||||| || | |||| | ||| || ||||| || ||||| || || ||||| ||||| Sbjct 341706 TGATAGTATCGAAAATGTCAAGCAAAAGATTCAAGATAAGGAAGGTATCCCTCCTGACCA 341765 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 ||| | || || ||||||||||| ||||||||||||| ||||| || | ||||| || Sbjct 341766 ACAGAGACTTATCTTTGCTGGTAAACAACTCGAGGATGGCCGTACTCTCTCTGACTACAA 341825 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 ||||||| ||||| |||||||| | ||| | ||||| || ||||| Sbjct 341826 CATCCAAAAAGAATCTACTCTTCACTTGGTCCTCCGTCTCCGTGGTGG 341873 Score = 168 bits (186), Expect = 8e-37 Identities = 176/231 (76%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||||||||||||||| ||||| || ||||| || || | || |||||||| Sbjct 342345 ATGCAAATCTTTGTCAAGACTCTTACTGGTAAGACCATCACCTTGGAAGTTGAGTCTTCC 342404 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 ||||| |||| |||| | ||| || ||||| || ||||| || || ||||| ||||| Sbjct 342405 GATAGTATTGAAAATGTCAAGCAAAAGATTCAAGATAAGGAAGGTATCCCTCCTGACCAA 342464 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || ||||| ||||| |||||||| |||||||| || | |||||| | || ||||| Sbjct 342465 CAACGTCTCATTTTCGCTGGTAAACAACTCGAAGACGGTCGTACTTTGAGTGATTATAAC 342524 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGACAA 27636 | ||||| ||||| |||||||| || || | |||||||| || || ||| Sbjct 342525 ATTCAAAAAGAATCTACTCTTCACCTGGTTCTTCGTCTTCGTGGCGGTCAA 342575 Score = 125 bits (138), Expect = 8e-24 Identities = 128/165 (78%), Gaps = 2/165 (1%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCA-GG 27464 |||||||||||||||||||| ||||| || || |||||||| | || ||| || | Sbjct 341875 ATGCAAATCTTTGTCAAGACTCTTACTGGTAAAACTATTACCTTAGAAGTT-CGTAATTC 341933 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 ||| || || | |||| | ||| || || || |||||||| || |||||||| ||||| Sbjct 341934 TGANAGTATCGAAAATGTCAAGCAAAAGATCCAAGACAAGGAAGGTATTCCTCCTGACCA 341993 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTAC 27569 ||| ||||| ||||| |||||||| ||||| || |||| ||||| Sbjct 341994 GCAACGTCTTATTTTCGCTGGTAAACAACTTGAAGATGGCCGTAC 342038 >seq9 Length=817392 Score = 127 bits (140), Expect = 2e-24 Identities = 116/144 (81%), Gaps = 2/144 (1%) Strand=Plus/Minus Query 27490 AAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAG 27549 || ||||| |||||||| || |||||||| ||||| || ||||| || ||||| ||||| Sbjct 168701 AAGATTCAAGACAAGGAAGGTATTCCTCCTGACCAACAACGTCTTATCTTTGCCGGTAAA 168642 Query 27550 CAACTCGAGGATGATCGTACCCT-AGCAGACTATAATGTCCAAAAGGAATCCACTCTTCA 27608 |||||||| || | ||||||| | ||| ||||| || ||||||||||||| ||||| || Sbjct 168641 CAACTCGAAGACGGTCGTACCTTGAGC-GACTACAACATCCAAAAGGAATCTACTCTCCA 168583 Query 27609 TCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| | |||||||| ||||| Sbjct 168582 CTTAGTTCTCCGTCTTCGTGGTGG 168559 >seq17 Length=565816 Score = 105 bits (116), Expect = 8e-18 Identities = 128/172 (74%), Gaps = 2/172 (1%) Strand=Plus/Minus Query 80046 ATAGTACATGCCCGTCTTGAGGCCCTTCTTCCAGCCGTACAGGTGCATAGAACTGAGCTT 80105 |||||||||||| ||||| | |||||||||||| | || | ||||||||| | || || Sbjct 415976 ATAGTACATGCCAGTCTTTAATCCCTTCTTCCAGGCATAAAAGTGCATAGAGGTCAGTTT 415917 Query 80106 CGCAAGTGTGGGGTTCTCCA-TGAAGATGTTCAGAGACTGAGACTGACAGATGAAAGCCC 80164 ||| || ||||| || | || | |||| ||| ||||| || ||| ||||| | Sbjct 415916 GCCAAA-GTTTGGTTCGGCAGTAAACAAATTCATAGATTGAGATTGGTCGATAAAAGCTC 415858 Query 80165 CACGATCTGCCGCCATTTCAATAATTGACTTTTGTGGAATTTCCCATACTGT 80216 | | ||| || ||||| |||||||| | |||||| ||| ||||||||||| Sbjct 415857 CTCTATCAGCGGCCATGTCAATAATAGTTCTTTGTGAAATCTCCCATACTGT 415806 >seq27 Length=327670 Score = 96.9 bits (106), Expect = 4e-15 Identities = 122/168 (73%), Gaps = 0/168 (0%) Strand=Plus/Plus Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 ||| | ||||| ||| | ||| || || || || ||||| || || ||||| || || Sbjct 85757 TGACACCATTGACAATGTCAAGCAAAAGATCCAAGATAAGGAAGGTATCCCTCCTGATCA 85816 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 || ||||| ||||| || ||||| |||||||| || | ||||||| | || || || Sbjct 85817 ACAACGTCTCATTTTCGCCGGTAAACAACTCGAAGACGGTCGTACCTTGAGTGATTACAA 85876 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | ||||||||||| || ||||| | || | |||||||| ||||| Sbjct 85877 CATTCAAAAGGAATCTACCCTTCACTTGGTTCTCCGTCTTCGTGGTGG 85924 >seq225 Length=43411 Score = 93.3 bits (102), Expect = 5e-14 Identities = 156/226 (69%), Gaps = 0/226 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||| ||||||||||| ||| | || | | | || | || || || ||| | Sbjct 3465 ATGCAAATATTTGTCAAGACACTTGCTGGAACGGCAGTTTTGTTAGAAGTCGACTCATCT 3406 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| ||| | | |||| |||||||| || ||||| | ||||| ||| | || Sbjct 3405 GATACTGTTGATATTGTGAAAAGCAAAATTCAAGAAAAGGAAGACATTCCGCCAAATCAA 3346 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || ||| |||| |||||||| || |||||||| ||| || ||| || || ||||| Sbjct 3345 CAACGTTTAATCTTTGCTGGCAAACAACTCGAAAATGGTCATACTCTGAGTGAATATAAC 3286 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTG 27631 |||||| ||||| | | | |||| || | |||| || |||| Sbjct 3285 ATCCAAAGTGAATCTATTATAGATCTTCTCCTAAGTCTACGTGGTG 3240 >seq47 Length=189370 Score = 93.3 bits (102), Expect = 5e-14 Identities = 127/175 (73%), Gaps = 2/175 (1%) Strand=Plus/Minus Query 80043 CAGATAGTACATGCCCGTCTTGAGGCCCTTCTTCCAGCCGTACAGGTGCATAGAACTGAG 80102 || |||||||||||| ||||| || |||||||||||| | || | |||||||||| | | Sbjct 108705 CAAATAGTACATGCCAGTCTTTAGTCCCTTCTTCCAGGCATAAAAGTGCATAGAAGTCA- 108647 Query 80103 CTTCGCAAGTGTGGGGTTCTCCA-TGAAGATGTTCAGAGACTGAGACTGACAGATGAAAG 80161 || || | || ||||| || | || | |||| ||| ||||| || || || | Sbjct 108646 ATTTGCCAAAGTTTGGTTCGGCAGTAAACAAATTCATAGATTGAGATTGGTCAATAAAGG 108587 Query 80162 CCCCACGATCTGCCGCCATTTCAATAATTGACTTTTGTGGAATTTCCCATACTGT 80216 | || | ||| || ||||| |||||||| | |||||| ||| ||||| || || Sbjct 108586 CTCCTCTATCAGCGGCCATGTCAATAATAGTTCTTTGTGAAATCTCCCACACGGT 108532 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570300519372320