Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizopus_20microsporus_20[genbank_20GCA_5F900000135.1_202014-11-26] 1,386 sequences; 49,591,775 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq1 102 5e-17 seq4 95.1 8e-15 seq9 93.3 3e-14 seq27 89.7 3e-13 >seq1 Length=2399970 Score = 102 bits (112), Expect = 5e-17 Identities = 161/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATC--TG 34537 ||||| | |||||| | |||| || ||||| || ||||||||||||||||| | Sbjct 342571 CCGCCACGAAGACGAAGAACCAGGTGAAGAGTAGATTCTTTTTGAATGTTATAATCACTC 342512 Query 34538 AAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCG 34597 ||||| || ||||||| ||||||||||| || || || | ||| |||||||| || | Sbjct 342511 AAAGTA--CGACCGTCTTCGAGTTGTTTACCAGCGAAAATGAGACGTTGTTGGTCAGGAG 342454 Query 34598 GCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAAAATTGTGTCTTCGCTCTCCA 34657 | | || ||||| ||| |||||||| || | | ||| | || ||| | Sbjct 342453 GGATACCTTCCTTATCTTGAATCTTTTGCTTGACATTTTCAATACTATCGGAAGACTCAA 342394 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 |||||| ||| || || ||||| || | || || ||||| || ||||| Sbjct 342393 CTTCCAAGGTGATGGTCTTACCAGTAAGAGTCTTGACAAAGATTTGCAT 342345 Score = 86.0 bits (94), Expect = 4e-12 Identities = 102/140 (73%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||| | ||||| || ||||| || ||||| ||||| || || || || || Sbjct 342334 AGACGGAGGACCAAGTGAAGAGTAGATTCTTTTTGGATGTTGTAGTCNNNNAGAGTACGG 342275 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | ||||||||||||||||| || || || | ||| || ||||| || || | || ||| Sbjct 342274 CCATCTTCAAGTTGTTTACCAGCGAAAATAAGACGTTGCTGGTCAGGAGGAATACCTTCC 342215 Query 34609 TTGTCTGTGATCTTTTGTTT 34628 |||||| ||||||||| || Sbjct 342214 TTGTCTTGGATCTTTTGCTT 342195 >seq4 Length=1094480 Score = 95.1 bits (104), Expect = 8e-15 Identities = 106/142 (75%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||| | ||||| || ||||| |||||||| |||||||| || || || || Sbjct 349650 AGACGAAGGACCAAGTGAAGAGTAGATTCCTTTTGGATGTTATAGTCGCTTAGAGTACGG 349591 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | ||||| ||||||||||| ||||| || | ||| ||||| || || || | || ||| Sbjct 349590 CCATCTTCGAGTTGTTTACCAGCAAAGATGAGACGTTGTTGATCAGGAGGAATACCTTCC 349531 Query 34609 TTGTCTGTGATCTTTTGTTTTA 34630 |||||| ||||||||||||| Sbjct 349530 TTGTCTTGAATCTTTTGTTTTA 349509 >seq9 Length=817392 Score = 93.3 bits (102), Expect = 3e-14 Identities = 110/149 (74%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || | |||||| | || || |||||||| |||||||| ||||| || || Sbjct 168559 CCACCACGAAGACGGAGAACTAAGTGGAGAGTAGATTCCTTTTGGATGTTGTAGTCGCTC 168618 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 | || || ||||||| ||||||||||||||||| || | ||| |||||||| || || Sbjct 168619 AAGGTACGACCGTCTTCGAGTTGTTTACCGGCAAAGATAAGACGTTGTTGGTCAGGAGGA 168678 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTT 34628 | || ||||||||| |||||||| || Sbjct 168679 ATACCTTCCTTGTCTTGAATCTTTTGCTT 168707 >seq27 Length=327670 Score = 89.7 bits (98), Expect = 3e-13 Identities = 109/149 (73%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || | |||||| | ||||| || || || |||||||||||||| ||||| Sbjct 85924 CCACCACGAAGACGGAGAACCAAGTGAAGGGTAGATTCCTTTTGAATGTTGTAATCACTC 85865 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 | || || ||||||| |||||||||||||| || || | ||| ||||| || || || Sbjct 85864 AAGGTACGACCGTCTTCGAGTTGTTTACCGGCGAAAATGAGACGTTGTTGATCAGGAGGG 85805 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTT 34628 | || ||||| ||| ||||||||| || Sbjct 85804 ATACCTTCCTTATCTTGGATCTTTTGCTT 85776 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314724283626938