Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizopus_20microsporus_20[genbank_20GCA_5F900000135.1_202014-11-26] 1,386 sequences; 49,591,775 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq4 123 2e-23 seq27 118 9e-22 seq9 109 5e-19 seq1 107 2e-18 >seq4 Length=1094480 Score = 123 bits (136), Expect = 2e-23 Identities = 175/246 (71%), Gaps = 0/246 (0%) Strand=Plus/Plus Query 26972 TTTTAATTTATACGCCATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCT 27031 |||| || |||| |||||| || ||||| || || || || || ||| | |||||| | Sbjct 349417 TTTTTATAAATACATCATGCAAATCTTTGTCAAGACACTTACTGGAAAGACAATTACTTT 349476 Query 27032 TGAAGTGGAACCGTCCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGG 27091 ||||| ||| | || ||| | || || | || |||||||| ||||||||||| ||||| Sbjct 349477 AGAAGTTGAATCTTCTGACACTATCGACAATGTAAAACAAAAGATTCAAGACAAGGAAGG 349536 Query 27092 CATACCACCCGATCAACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGAC 27151 || || || |||||||| ||| | || | || || |||||| | ||||| | || Sbjct 349537 TATTCCTCCTGATCAACAACGTCTCATCTTTGCTGGTAAACAACTCGAAGATGGCCGTAC 349596 Query 27152 CGTTTCCGATTACAACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGG 27211 | ||| || ||||| |||||||| || || | || ||||| | ||| | || || Sbjct 349597 TCTAAGCGACTATAACATCCAAAAGGAATCTACTCTTCACTTGGTCCTTCGTCTCCGTGG 349656 Query 27212 TGGCAT 27217 ||| || Sbjct 349657 TGGTAT 349662 >seq27 Length=327670 Score = 118 bits (130), Expect = 9e-22 Identities = 130/173 (75%), Gaps = 0/173 (0%) Strand=Plus/Plus Query 27045 TCCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGAT 27104 || ||| | ||||| | ||||| ||||| || ||||| || ||||| || || || ||| Sbjct 85755 TCTGACACCATTGACAATGTCAAGCAAAAGATCCAAGATAAGGAAGGTATCCCTCCTGAT 85814 Query 27105 CAACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTAC 27164 ||||| ||| | || | |||||| |||||| | |||||| || ||| | |||||| Sbjct 85815 CAACAACGTCTCATTTTCGCCGGTAAACAACTCGAAGACGGTCGTACCTTGAGTGATTAC 85874 Query 27165 AACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 |||||||||||||| || ||| | || |||||| | ||| | || ||||| || Sbjct 85875 AACATTCAAAAGGAATCTACCCTTCACTTGGTTCTCCGTCTTCGTGGTGGTAT 85927 >seq9 Length=817392 Score = 109 bits (120), Expect = 5e-19 Identities = 128/173 (74%), Gaps = 0/173 (0%) Strand=Plus/Minus Query 27045 TCCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGAT 27104 |||||| | ||||| | ||||| ||||| ||||||||||| ||||| || || || || Sbjct 168728 TCCGACACCATTGACAACGTCAAGCAAAAGATTCAAGACAAGGAAGGTATTCCTCCTGAC 168669 Query 27105 CAACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTAC 27164 ||||| ||| | || | ||||| |||||| | |||||| || ||| | ||| ||| Sbjct 168668 CAACAACGTCTTATCTTTGCCGGTAAACAACTCGAAGACGGTCGTACCTTGAGCGACTAC 168609 Query 27165 AACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||||| |||||||| || || | || || ||| | ||| | || ||||| || Sbjct 168608 AACATCCAAAAGGAATCTACTCTCCACTTAGTTCTCCGTCTTCGTGGTGGTAT 168556 >seq1 Length=2399970 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || ||||| || ||||| || || ||| | || || | ||||| || | ||| Sbjct 342345 ATGCAAATCTTTGTCAAGACTCTTACTGGTAAGACCATCACCTTGGAAGTTGAGTCTTCC 342404 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || ||||| | ||||| ||||| |||||||| || ||||| || || || || ||| Sbjct 342405 GATAGTATTGAAAATGTCAAGCAAAAGATTCAAGATAAGGAAGGTATCCCTCCTGACCAA 342464 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || ||| | || | ||| || |||||| | |||||| || || | ||||| ||| Sbjct 342465 CAACGTCTCATTTTCGCTGGTAAACAACTCGAAGACGGTCGTACTTTGAGTGATTATAAC 342524 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 |||||||| || || || | || ||||| | ||| | || || || Sbjct 342525 ATTCAAAAAGAATCTACTCTTCACCTGGTTCTTCGTCTTCGTGGCGG 342571 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434910865038720