Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizopus_20microsporus_20[genbank_20GCA_5F900000135.1_202014-11-26] 1,386 sequences; 49,591,775 total letters Query= NC_029255.1 Length=129563 Score E Sequences producing significant alignments: (Bits) Value seq176 104 2e-17 seq13 100 2e-16 seq502 86.0 5e-12 >seq176 Length=52331 Score = 104 bits (114), Expect = 2e-17 Identities = 180/259 (69%), Gaps = 12/259 (5%) Strand=Plus/Plus Query 118358 TGTAGTTTTCCAAAATAAAATCTTCAAACTTAAAGTCTTCTATATTTTTGATATCCTT-- 118415 |||||||||| || | ||||||||||||||| || || || ||| | || | ||| Sbjct 27728 TGTAGTTTTCTAATACAAAATCTTCAAACTTGAAATCATCGATAGT----ATCTACTTTA 27783 Query 118416 --GTTTATGGATAGTGTGGGAAACGGGAGAGGCTCCCTTGTGAGTTGGAGTTTCAGTGGC 118473 ||| || || || || || || || || | | | || | || |||| Sbjct 27784 CGGTTGATTTTTAAAGTAGGGAAAGGCTTGGGTTCACGTTGAACCTGTTGCTTAAGTGCG 27843 Query 118474 TCAATGTGATTCATATAGACATGAGCATCCCCAATTGTATGTATGAATTCACCAGGTGTA 118533 |||| |||| || ||| ||||| | ||| || |||||||||||||||||||||||| | Sbjct 27844 TCAAGATGATCCACATAAACATGTGTATCGCCCATTGTATGTATGAATTCACCAGGTTCA 27903 Query 118534 AGCCCTGTCAGGTGAGCAATCATGTATGTCAACAAACTG--TAGCTGGCTACATTAAAAG 118591 || |||| | || ||||||||| ||||| ||| || || || | ||| |||| Sbjct 27904 AGATCTGTTACATGCGCAATCATGCGTGTCA--AAAGTGCATAAGAAGCAATATTGAAAG 27961 Query 118592 GAACACCCAGACCCATGTC 118610 |||| ||||| ||||| || Sbjct 27962 GAACCCCCAGTCCCATATC 27980 >seq13 Length=664605 Score = 100 bits (110), Expect = 2e-16 Identities = 179/259 (69%), Gaps = 12/259 (5%) Strand=Plus/Minus Query 118358 TGTAGTTTTCCAAAATAAAATCTTCAAACTTAAAGTCTTCTATATTTTTGATATCCTT-- 118415 ||||||| || || | ||||||||||||||| || || || ||| | || | ||| Sbjct 416989 TGTAGTTCTCTAATACAAAATCTTCAAACTTGAAATCATCGATAGT----ATCTACTTTA 416934 Query 118416 --GTTTATGGATAGTGTGGGAAACGGGAGAGGCTCCCTTGTGAGTTGGAGTTTCAGTGGC 118473 ||| || || || || || || || || | | | || | || |||| Sbjct 416933 CGGTTGATTTTTAAAGTAGGGAAAGGTTTGGGTTCACGTTGAACCTGTTGCTTGAGTGCG 416874 Query 118474 TCAATGTGATTCATATAGACATGAGCATCCCCAATTGTATGTATGAATTCACCAGGTGTA 118533 |||| |||| || ||| ||||| | ||| || ||||||||||||||||||||||| | Sbjct 416873 TCAAGATGATCCACATAAACATGTGTATCGCCCATTGTATGTATGAATTCACCAGGATCA 416814 Query 118534 AGCCCTGTCAGGTGAGCAATCATGTATGTCAACAAACTG--TAGCTGGCTACATTAAAAG 118591 || |||| | || ||||||||| ||||| ||| || || || | ||| |||| Sbjct 416813 AGATCTGTTACATGCGCAATCATGCGTGTCA--AAAGTGCATAAGAAGCAATATTGAAAG 416756 Query 118592 GAACACCCAGACCCATGTC 118610 |||||||||| ||||| || Sbjct 416755 GAACACCCAGCCCCATATC 416737 >seq502 Length=13737 Score = 86.0 bits (94), Expect = 5e-12 Identities = 178/260 (68%), Gaps = 14/260 (5%) Strand=Plus/Minus Query 118358 TGTAGTTTTCCAAAATAAAATCTTCAAACTTAAAGTCTTCTATATTTTTGATATCCTT-- 118415 ||||||| || || | ||||||||||| ||| || || || ||| | || | ||| Sbjct 8441 TGTAGTTCTCTAATACAAAATCTTCAAGCTTGAAATCATCGATAGT----ATCTACTTTA 8386 Query 118416 --GTTTATGGATAGTGTGGGAAACGGGAGAGGCTCCCTTGTGAGT-TGGAGTTTCAGTGG 118472 ||| || || || ||||| || || || | | |||| | | || |||| Sbjct 8385 CGGTTGATTTTTAAAGTAGGAAAAGGCTTGGGTTCACGT-TGAGCCTATTGCTTGAGTGC 8327 Query 118473 CTCAATGTGATTCATATAGACATGAGCATCCCCAATTGTATGTATGAATTCACCAGGTGT 118532 || | ||||| || ||| ||||| | ||| || ||||||||||||||||||||||| Sbjct 8326 GTCTAGGTGATCCACATAAACATGTGTATCGCCCATTGTATGTATGAATTCACCAGGATC 8267 Query 118533 AAGCCCTGTCAGGTGAGCAATCATGTATGTCAACAAACTG--TAGCTGGCTACATTAAAA 118590 ||| || | | || |||||||| ||||| ||| || || || | ||||||| Sbjct 8266 AAGATCTATTACATGCACAATCATGCGTGTCA--AAAGTGCATAAGAAGCAAGATTAAAA 8209 Query 118591 GGAACACCCAGACCCATGTC 118610 ||||| ||||| || || || Sbjct 8208 GGAACGCCCAGTCCTATATC 8189 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414469798709704