Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizopus_20microsporus_20[genbank_20GCA_5F900000135.1_202014-11-26] 1,386 sequences; 49,591,775 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq4 176 1e-38 seq1 158 3e-33 seq9 136 9e-27 seq27 132 1e-25 seq236 104 5e-17 seq17 87.8 4e-12 >seq4 Length=1094480 Score = 176 bits (194), Expect = 1e-38 Identities = 166/212 (78%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| | ||||||||| || || |||||||||||||| || || || | |||||| Sbjct 349644 AGGACCAAGTGAAGAGTAGATTCCTTTTGGATGTTATAGTCGCTTAGAGTACGGCCATCT 349585 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || || || || || || ||||| || |||||||| |||||||||| ||||||||||| Sbjct 349584 TCGAGTTGTTTACCAGCAAAGATGAGACGTTGTTGATCAGGAGGAATACCTTCCTTGTCT 349525 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 || ||||||||||| || || ||||| |||||||| |||||| || | ||| || ||| Sbjct 349524 TGAATCTTTTGTTTTACATTGTCGATAGTGTCAGAAGATTCAACTTCTAAAGTAATTGTC 349465 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAt 211114 ||||| || || ||||| ||||| | ||||| Sbjct 349464 TTTCCAGTAAGTGTCTTGACAAAGATTTGCAT 349433 >seq1 Length=2399970 Score = 158 bits (174), Expect = 3e-33 Identities = 164/215 (76%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| | ||||||||| || |||||||||||||| || || | || || | ||||| Sbjct 341858 AGGACCAAGTGAAGAGTAGATTCTTTTTGGATGTTGTAGTCAGAGAGAGTACGGCCATCC 341799 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || || || || || || |||||||| | |||||||||||||| | |||||||| || Sbjct 341798 TCGAGTTGTTTACCAGCAAAGATAAGTCTCTGTTGGTCAGGAGGGATACCTTCCTTATCT 341739 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 || |||||||| || || |||||||| | ||||| ||| || || | ||| || ||| Sbjct 341738 TGAATCTTTTGCTTGACATTTTCGATACTATCAGAAGATTCGACTTCTAAAGTAATTGTC 341679 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAtttt 211117 || || || ||||||||||| || | |||||||| Sbjct 341678 TTGCCGGTAAGAGTCTTTACGAAGATTTGCATTTT 341644 Score = 152 bits (168), Expect = 1e-31 Identities = 169/223 (76%), Gaps = 2/223 (1%) Strand=Plus/Minus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATC-CGCAAGGG 210951 |||||| | || || ||||||||||| || |||||||| ||||||||||| | ||| | Sbjct 342566 ACGAAGACGAAGAACCAGGTGAAGAGTAGATTCTTTTTGAATGTTATAATCACTCAAAG- 342508 Query 210952 TCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTC 211011 | | || ||||| || || || || ||||| || || ||||||||||||||||| | | Sbjct 342507 TACGACCGTCTTCGAGTTGTTTACCAGCGAAAATGAGACGTTGTTGGTCAGGAGGGATAC 342448 Query 211012 CTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGA 211071 ||||||| || || |||||||| || || ||||| || | || || ||||| || | Sbjct 342447 CTTCCTTATCTTGAATCTTTTGCTTGACATTTTCAATACTATCGGAAGACTCAACTTCCA 342388 Query 211072 GAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAt 211114 ||||| ||||| || || |||||||| ||||| | ||||| Sbjct 342387 AGGTGATGGTCTTACCAGTAAGAGTCTTGACAAAGATTTGCAT 342345 Score = 141 bits (156), Expect = 2e-28 Identities = 118/146 (81%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| | ||||||||| || |||||||||||||| || || || || | |||||| Sbjct 342328 AGGACCAAGTGAAGAGTAGATTCTTTTTGGATGTTGTAGTCNNNNAGAGTACGGCCATCT 342269 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || || || || || ||||| ||||| ||||| ||||||||||||| ||||||||||| Sbjct 342268 TCAAGTTGTTTACCAGCGAAAATAAGACGTTGCTGGTCAGGAGGAATACCTTCCTTGTCT 342209 Query 211023 TGGATCTTTTGTTTCACGTTTTCGAT 211048 ||||||||||| || || |||||||| Sbjct 342208 TGGATCTTTTGCTTGACATTTTCGAT 342183 Score = 123 bits (136), Expect = 6e-23 Identities = 122/158 (77%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 210957 CCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCC 211016 |||||||| || || || || ||||| ||||| ||||| ||||||||||||| |||||| Sbjct 342032 CCATCTTCAAGTTGTTTACCAGCGAAAATAAGACGTTGCTGGTCAGGAGGAATACCTTCC 341973 Query 211017 TTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTG 211076 ||||| ||||||||||| || || |||||||| | ||||| | ||| || | || Sbjct 341972 TTGTCTTGGATCTTTTGCTTGACATTTTCGATACTNTCAGAATTACGAACTTCTAAGGTA 341913 Query 211077 ATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAt 211114 || || || || || |||||||| ||||| | ||||| Sbjct 341912 ATAGTTTTACCAGTAAGAGTCTTGACAAAGATTTGCAT 341875 >seq9 Length=817392 Score = 136 bits (150), Expect = 9e-27 Identities = 133/169 (79%), Gaps = 2/169 (1%) Strand=Plus/Plus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATC-CGCAAGGG 210951 |||||| | || || | ||| ||||| || || ||||||||||| || || | ||| || Sbjct 168564 ACGAAGACGGAGAACTAAGTGGAGAGTAGATTCCTTTTGGATGTTGTAGTCGCTCAA-GG 168622 Query 210952 TCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTC 211011 | | || ||||| || || || || || |||||||| ||||||||||||||||||| | Sbjct 168623 TACGACCGTCTTCGAGTTGTTTACCGGCAAAGATAAGACGTTGTTGGTCAGGAGGAATAC 168682 Query 211012 CTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCT 211060 |||||||||| || |||||||| || ||||| || |||||||| || || Sbjct 168683 CTTCCTTGTCTTGAATCTTTTGCTTGACGTTGTCAATGGTGTCGGAACT 168731 >seq27 Length=327670 Score = 132 bits (146), Expect = 1e-25 Identities = 143/187 (76%), Gaps = 2/187 (1%) Strand=Plus/Minus Query 210875 GGGTTAGCTAATATTTCAACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGAT 210934 ||||| | ||||| | |||||| | || || | |||||| || || || ||||| || Sbjct 85937 GGGTTCGATAATACCACCACGAAGACGGAGAACCAAGTGAAGGGTAGATTCCTTTTGAAT 85878 Query 210935 GTTATAATC-CGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTT 210993 ||| ||||| | ||||| | | || ||||| || || || || ||||| || || |||| Sbjct 85877 GTTGTAATCACTCAAGG-TACGACCGTCTTCGAGTTGTTTACCGGCGAAAATGAGACGTT 85819 Query 210994 GTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGT 211053 |||| |||||||| | |||||||| || ||||||||||| || || || || ||||||| Sbjct 85818 GTTGATCAGGAGGGATACCTTCCTTATCTTGGATCTTTTGCTTGACATTGTCAATGGTGT 85759 Query 211054 CAGAGCT 211060 ||||||| Sbjct 85758 CAGAGCT 85752 >seq236 Length=40127 Score = 104 bits (114), Expect = 5e-17 Identities = 78/92 (85%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 210969 TGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATC 211028 |||||||| ||||| || || |||||||| |||||||||| |||||||| || |||||| Sbjct 35521 TGCTTGCCGGCGAAAATGAGACGTTGTTGATCAGGAGGAATACCTTCCTTATCTTGGATC 35462 Query 211029 TTTTGTTTCACGTTTTCGATGGTGTCAGAGCT 211060 ||||| || || || || |||||||||||||| Sbjct 35461 TTTTGCTTGACATTGTCAATGGTGTCAGAGCT 35430 >seq17 Length=565816 Score = 87.8 bits (96), Expect = 4e-12 Identities = 231/353 (65%), Gaps = 0/353 (0%) Strand=Plus/Plus Query 178088 CCAAAGTTCTTTTGGTTGCTCTTTCTGCAAATGGCATCTTTGTACGCAATGAAGGGCATT 178147 || ||||| | || || ||||||||| | ||||| || || ||||| || | Sbjct 455446 CCCAAGTTTTGCTGATTACTCTTTCTGTTACAAGCATCCTTATAGAGTATGAACGGATTA 455505 Query 178148 CCCACCTCAGCTTGAGCCACGAGAATGTGATGCCAAAGCTCCTGGGCTCGGACAGTCTTT 178207 || ||| | ||||||| | | |||| || ||| |||| || || || || | | Sbjct 455506 CCTGTCTCCGTTTGAGCCTCCAAAATGGCATACCACAGCTTTTGAGCCTTGATTGTTTCT 455565 Query 178208 TTGGCTTTTCCTTCATTCTCGTACTTTTTGTAGAGCTCCTCGAATTCCGGTCCATAGACA 178267 | ||| |||||||| ||||| |||| ||||| | | || || || | | Sbjct 455566 CTAGCTCTTCCTTCACGTTCGTATTTTTCATAGAGAGCAACAAACTCATCACCCCAAATT 455625 Query 178268 TCATCGAGACCGGGAGCCTCATTGGGGCAGAAGAGACTCCACTGACCGTCTTCCTTCACT 178327 |||| | || |||||||||||||| || || ||| ||| | ||| | || | || Sbjct 455626 TCATGTAATCCAGGAGCCTCATTGGGACAAAACAGAGACCAATCACCACCGTCTCTGACA 455685 Query 178328 CGTTTCATGAAGAGGTCAGAGGTCCAGATGGCATAGAAAATCTCTCTGGCTCTCATCAGG 178387 || | ||||||||| |||| |||||| |||||||| | || | ||||| || | Sbjct 455686 CGCTGCATGAAGAGATCAGGAATCCAGAGAGCATAGAACAGATCGCGAGCTCTGATTTCG 455745 Query 178388 TCATTTCCTCCGGGTTTTCTGGCATCAACAAAGTCAAAAATGTCCACATGCCA 178440 || || || | ||||| ||| | |||| |||||||| ||||||| Sbjct 455746 TCTTTGCCAAAGTTTTTTCGCAAATCTAAAAAGGTGAAAATGTCTGCATGCCA 455798 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159131415633890