Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizopus_20microsporus_20[genbank_20GCA_5F900000135.1_202014-11-26] 1,386 sequences; 49,591,775 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq1 172 1e-37 seq4 149 1e-30 seq9 140 8e-28 seq27 120 7e-22 seq236 95.1 3e-14 >seq1 Length=2399970 Score = 172 bits (190), Expect = 1e-37 Identities = 167/215 (78%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 ||||| | ||| ||||| ||||||||||||| ||||| || | | ||| | ||||| Sbjct 341858 AGGACCAAGTGAAGAGTAGATTCTTTTTGGATGTTGTAGTCAGAGAGAGTACGGCCATCC 341799 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || || || || ||||| |||||||||| |||||||| || || ||||||||||| ||| Sbjct 341798 TCGAGTTGTTTACCAGCAAAGATAAGTCTCTGTTGGTCAGGAGGGATACCTTCCTTATCT 341739 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 || ||||||||||| ||| |||||| | || || | ||| || ||||| || || ||| Sbjct 341738 TGAATCTTTTGCTTGACATTTTCGATACTATCAGAAGATTCGACTTCTAAAGTAATTGTC 341679 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716 ||||| || | ||| |||| ||| | ||||||||| Sbjct 341678 TTGCCGGTAAGAGTCTTTACGAAGATTTGCATTTT 341644 Score = 149 bits (164), Expect = 1e-30 Identities = 166/222 (75%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||| | || || ||||| ||||| ||||||||||| | || ||||| |||||| Sbjct 342566 ACGAAGACGAAGAACCAGGTGAAGAGTAGATTCTTTTTGAATGTTATAATCACTCAAAGT 342507 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | || ||||| || || || |||||||| || || ||||||||||| || || ||||| Sbjct 342506 ACGACCGTCTTCGAGTTGTTTACCAGCGAAAATGAGACGTTGTTGGTCAGGAGGGATACC 342447 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 |||||| ||||| ||||||||||| ||| ||| || | || || | || || || || Sbjct 342446 TTCCTTATCTTGAATCTTTTGCTTGACATTTTCAATACTATCGGAAGACTCAACTTCCAA 342387 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| ||||| || || | ||| || | || | |||||| Sbjct 342386 GGTGATGGTCTTACCAGTAAGAGTCTTGACAAAGATTTGCAT 342345 Score = 145 bits (160), Expect = 2e-29 Identities = 119/146 (82%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 ||||| | ||| ||||| ||||||||||||| ||||| || | ||| | |||||| Sbjct 342328 AGGACCAAGTGAAGAGTAGATTCTTTTTGGATGTTGTAGTCNNNNAGAGTACGGCCATCT 342269 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || || || || |||||||| ||||| ||||| ||||| || |||||||||||||||||| Sbjct 342268 TCAAGTTGTTTACCAGCGAAAATAAGACGTTGCTGGTCAGGAGGAATACCTTCCTTGTCT 342209 Query 225622 TGGATCTTTTGCTTCACAGCTTCGAT 225647 |||||||||||||| ||| |||||| Sbjct 342208 TGGATCTTTTGCTTGACATTTTCGAT 342183 Score = 123 bits (136), Expect = 6e-23 Identities = 128/168 (76%), Gaps = 0/168 (0%) Strand=Plus/Minus Query 225546 CAAAGTTCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGG 225605 |||||| | |||||||| || || || |||||||| ||||| ||||| ||||| || || Sbjct 342042 CAAAGTACGGCCATCTTCAAGTTGTTTACCAGCGAAAATAAGACGTTGCTGGTCAGGAGG 341983 Query 225606 AATACCTTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCAC 225665 |||||||||||||||||||||||||||||| ||| |||||| | || || | || Sbjct 341982 AATACCTTCCTTGTCTTGGATCTTTTGCTTGACATTTTCGATACTNTCAGAATTACGAAC 341923 Query 225666 GTCTAACGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| || || || || || || | ||| || | || | |||||| Sbjct 341922 TTCTAAGGTAATAGTTTTACCAGTAAGAGTCTTGACAAAGATTTGCAT 341875 >seq4 Length=1094480 Score = 149 bits (164), Expect = 1e-30 Identities = 160/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 ||||| | ||| ||||| ||||| ||||||| || || ||| | ||| | |||||| Sbjct 349644 AGGACCAAGTGAAGAGTAGATTCCTTTTGGATGTTATAGTCGCTTAGAGTACGGCCATCT 349585 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || || || || ||||| ||||| || |||||||| || || |||||||||||||||||| Sbjct 349584 TCGAGTTGTTTACCAGCAAAGATGAGACGTTGTTGATCAGGAGGAATACCTTCCTTGTCT 349525 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 || |||||||| || ||| ||||| ||||| || | ||| || ||||| || || ||| Sbjct 349524 TGAATCTTTTGTTTTACATTGTCGATAGTGTCAGAAGATTCAACTTCTAAAGTAATTGTC 349465 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 || || || | || || | || | |||||| Sbjct 349464 TTTCCAGTAAGTGTCTTGACAAAGATTTGCAT 349433 >seq9 Length=817392 Score = 140 bits (154), Expect = 8e-28 Identities = 130/165 (79%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||| | || || | ||||||||| ||||| ||||||| ||||| ||| ||| || Sbjct 168564 ACGAAGACGGAGAACTAAGTGGAGAGTAGATTCCTTTTGGATGTTGTAGTCGCTCAAGGT 168623 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | || ||||| || || || || || |||||||| ||||||||||| || |||||||| Sbjct 168624 ACGACCGTCTTCGAGTTGTTTACCGGCAAAGATAAGACGTTGTTGGTCAGGAGGAATACC 168683 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGA 225656 |||||||||||| ||||||||||| || || |||||||| || Sbjct 168684 TTCCTTGTCTTGAATCTTTTGCTTGACGTTGTCAATGGTGTCGGA 168728 >seq27 Length=327670 Score = 120 bits (132), Expect = 7e-22 Identities = 126/166 (76%), Gaps = 0/166 (0%) Strand=Plus/Minus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||| | || || | ||| || || ||||| ||||| | |||||||| ||| || Sbjct 85919 ACGAAGACGGAGAACCAAGTGAAGGGTAGATTCCTTTTGAATGTTGTAATCACTCAAGGT 85860 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | || ||||| || || || || ||||| || || |||||||| || || || ||||| Sbjct 85859 ACGACCGTCTTCGAGTTGTTTACCGGCGAAAATGAGACGTTGTTGATCAGGAGGGATACC 85800 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAG 225657 |||||| ||||||||||||||||| ||| || |||||||| ||| Sbjct 85799 TTCCTTATCTTGGATCTTTTGCTTGACATTGTCAATGGTGTCAGAG 85754 >seq236 Length=40127 Score = 95.1 bits (104), Expect = 3e-14 Identities = 75/90 (83%), Gaps = 0/90 (0%) Strand=Plus/Minus Query 225568 TGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATC 225627 ||||| || ||||| || || |||||||| || || |||||||||||||| ||||||||| Sbjct 35521 TGCTTGCCGGCGAAAATGAGACGTTGTTGATCAGGAGGAATACCTTCCTTATCTTGGATC 35462 Query 225628 TTTTGCTTCACAGCTTCGATGGTGTCTGAG 225657 |||||||| ||| || |||||||| ||| Sbjct 35461 TTTTGCTTGACATTGTCAATGGTGTCAGAG 35432 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192510022881884