Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizopus_20microsporus_20[genbank_20GCA_5F900000135.1_202014-11-26] 1,386 sequences; 49,591,775 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq107 190 2e-43 >seq107 Length=77526 Score = 190 bits (210), Expect = 2e-43 Identities = 550/838 (66%), Gaps = 14/838 (2%) Strand=Plus/Plus Query 4259 TTGGTATTCGGATACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAACGAAATATTTTC 4318 ||| || || || || |||||||| ||||| || || ||||||| | || || | || Sbjct 39734 TTGATAGTCAGAGACACGCTTTTCAAAGAAGTTGGTCTTGCCTTGAAGAGAGATCATGTC 39793 Query 4319 CATAAAATCAAACGGATTAGTTGCGTTGTAATGTTTTTCACACTTTAGAGCTACAAGCAA 4378 |||||| ||||| ||||| || || ||||| || || | ||||| || | | Sbjct 39794 CATAAAGTCAAATGGATTGGTAGCCATGTAAATCTTGTCGAATCCAAGAGCAACCATGAG 39853 Query 4379 TCGGTCAGCTACAAATTCTATATACTGGCTCATGAGTTCGCAGTTAATTCCAATTAATCT 4438 || ||||| || ||||| || || |||| ||| | | | || || || || | Sbjct 39854 GCGATCAGCAACGAATTCGATGTATTGGCACATCAAGGCAGAATTCATGCCGATGAGAGC 39913 Query 4439 CACAGGTAGCGCGTATGTCAAAAACTCTTGTTCTATAGTTACGGCTTCTGTGATTATATC 4498 || || || || | |||||||| || ||||| || | || ||||| ||| ||||| Sbjct 39914 AACGGGAAGAGCATCCGTCAAAAATTCCTGTTCAATGCTGACAGCTTCCAAGATGATATC 39973 Query 4499 TTTTATTTTATCTTTAGATGGTTTATTTACTAAG-TATCCAAACAATAAACACGCAAAAT 4557 || | |||| | | | |||| ||| | ||| || | ||| ||||| | Sbjct 39974 CTTGACGCGTTCTTG-GCTAGGACGCTTACGAAGATGGGTAAATAAAAGACAAGCAAAGT 40032 Query 4558 CACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTA 4617 || ||| | ||||| || | | |||| ||| || || || || || ||||| | Sbjct 40033 CAGTATGAAGGCCTTCATCACGACAGATCAATTCATTGCTGAATGTCAAACCAGGCATCA 40092 Query 4618 AACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTA 4677 |||| | || || |||||||| || | ||||| || ||||| ||||| || ||||| | Sbjct 40093 AACCACGTTTCTTGAGCCAAAAAATGGAAGCAAAGGAACCAGAGAAGAAGATACCTTCGA 40152 Query 4678 CGGCGGCAAACGCTACTAATCGGGACCCGAACGAGCTGGCTTTGTCTTTAATCCATTTTA 4737 | || ||||| || || | || | || || | | || |||||| || | Sbjct 40153 CAGCAGCAAAGGCAACAAGACGCTCAGCAAAAGAACCG---TTAGAGGAAATCCACTTGA 40209 Query 4738 ATGCCCAGTTAGCTTTTTTCTTAACGCACGGAATTGTGTATATAGCGTTAAATAATTTAC 4797 | ||||| | ||| ||| | || | || || || |||| ||||| ||| | | Sbjct 40210 AGGCCCAATCAGCCTTTCTTTTGATACAAGGGATAGTGTCAATAGCAGAAAAGAGCAT-- 40267 Query 4798 TTTTTTCAAATGGGT--CTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGAATG 4855 || |||| ||| | ||| ||||||||||| || | || || || |||| | || Sbjct 40268 TTCTTTCTCTTGGTTATCTTTGATATAAGTGTCAATCAAAAGACTGTAAGTTTCTGCGTG 40327 Query 4856 TATATTTTCTATAGCAATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTA-CTTGAACTT 4914 || ||||| || || ||||| || || || ||| ||||||| | | |||| |||| Sbjct 40328 AATGTTTTCAATCATGATTTGAAAGCCATAGAAACATTTAGCTTCAGGAATCTTG-ACTT 40386 Query 4915 CGTTACAAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACG 4974 | | |||||| ||| || |||||||| || || || || || | ||||| || | Sbjct 40387 CATCACAAAAGTTTTGAACCAAGTTTTCATTAACAATGCCATCTGAACCAGCAAAGAAGG 40446 Query 4975 CCAAAACATGAGATATAAAGTACTGTTCG---TCAGGCTTAAGTTTTTTCCAGTGGGGCA 5031 |||| || |||| |||||| | ||||| || | | | |||| ||| | | | Sbjct 40447 CCAAGACGCGAGAGATAAAGAAGCGTTCGTTTTCGGTCATCTTGTTTTCCCAATCATGAA 40506 Query 5032 AATCTTTAGTTAAATCAACTTCTTCAACAGTCCAAAACGACGCTTCCGCTTTTTTGTA 5089 ||| || | ||||| | ||||||| | |||||||| || ||||| ||||| || || Sbjct 40507 GATCCTTGCTCAAATCGATTTCTTCAGCTGTCCAAAAGGAAGCTTCAGCTTTCTTATA 40564 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427042386331538