Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizopus_20microsporus_20[genbank_20GCA_5F900000135.1_202014-11-26] 1,386 sequences; 49,591,775 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq4 145 2e-29 seq1 141 2e-28 seq9 132 1e-25 >seq4 Length=1094480 Score = 145 bits (160), Expect = 2e-29 Identities = 156/205 (76%), Gaps = 1/205 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| || || || || || || ||||| || || || | || || ||| || ||| Sbjct 349436 CAAATCTTTGTCAAGACACTTACTGGAAAGACAATTACTTTAGAAGTTGAATCTTCTGAC 349495 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| || || |||||||||||||| ||||| ||||| || ||||| || || ||| Sbjct 349496 ACTATCGACAATGTAAAACAAAAGATTCAAGACAAGGAAGGTATTCCTCCTGATCAACAA 349555 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||| || || ||||| ||||||||||| | ||||| ||| |||||| || Sbjct 349556 CGTCTCATCTTTGCTGGTAAACAACTCGAAGATGGCCGTACTCTAAGCGACTATAACATC 349615 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 ||||| ||||| || || || |||| Sbjct 349616 CAAAAGGAATCTACTCTTCA-CTTG 349639 >seq1 Length=2399970 Score = 141 bits (156), Expect = 2e-28 Identities = 161/214 (75%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 177915 AAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAA 177974 ||||||| |||| ||||| || ||||| || || || || || || | || || ||| Sbjct 341644 AAAATGC---AAATCTTCGTAAAGACTCTTACCGGCAAGACAATTACTTTAGAAGTCGAA 341700 Query 177975 AGCTCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCG 178034 || || | ||||| || ||||| ||||||||||| || || ||||| |||||||| Sbjct 341701 TCTTCTGATAGTATCGAAAATGTCAAGCAAAAGATTCAAGATAAGGAAGGTATCCCTCCT 341760 Query 178035 GACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGAT 178094 ||||| || |||||||||| || || ||||| ||||| ||||| | ||||| | || Sbjct 341761 GACCAACAGAGACTTATCTTTGCTGGTAAACAACTCGAGGATGGCCGTACTCTCTCTGAC 341820 Query 178095 TATAACGTCCAAAAAGAATCAACACTGCATCTTG 178128 || ||| ||||||||||||| || || || |||| Sbjct 341821 TACAACATCCAAAAAGAATCTACTCTTCA-CTTG 341853 Score = 134 bits (148), Expect = 3e-26 Identities = 154/207 (74%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| || || || ||||| || || || || |||||| | || || || || || Sbjct 342348 CAAATCTTTGTCAAGACTCTTACTGGTAAGACCATCACCTTGGAAGTTGAGTCTTCCGAT 342407 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 | || || || ||||| ||||||||||| || || ||||| |||||||| ||||| ||| Sbjct 342408 AGTATTGAAAATGTCAAGCAAAAGATTCAAGATAAGGAAGGTATCCCTCCTGACCAACAA 342467 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || || ||||| || ||||| |||||||| || | ||| | ||||||||| | Sbjct 342468 CGTCTCATTTTCGCTGGTAAACAACTCGAAGACGGTCGTACTTTGAGTGATTATAACATT 342527 Query 178104 CAAAAAGAATCAACACTGCATCTTGTT 178130 ||||||||||| || || || || ||| Sbjct 342528 CAAAAAGAATCTACTCTTCACCTGGTT 342554 Score = 125 bits (138), Expect = 2e-23 Identities = 113/142 (80%), Gaps = 1/142 (1%) Strand=Plus/Plus Query 177987 ATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGA 178046 ||||| || ||||| |||||||| || ||||| ||||| || ||||| ||||||||||| Sbjct 342183 ATCGAAAATGTCAAGCAAAAGATCCAAGACAAGGAAGGTATTCCTCCTGACCAGCAACGT 342242 Query 178047 CTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAA 178106 ||||| ||||| || ||||| || |||||||| | ||||| || || ||| ||||| Sbjct 342243 CTTATTTTCGCTGGTAAACAACTTGAAGATGGCCGTACTCTNNNNGACTACAACATCCAA 342302 Query 178107 AAAGAATCAACACTGCATCTTG 178128 |||||||| || || || |||| Sbjct 342303 AAAGAATCTACTCTTCA-CTTG 342323 Score = 114 bits (126), Expect = 3e-20 Identities = 118/155 (76%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| || || || ||||| || || ||||| || ||| | || || | || || Sbjct 341878 CAAATCTTTGTCAAGACTCTTACTGGTAAAACTATTACCTTAGAAGTTCGTAATTCTGAN 341937 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 | ||||| || ||||| |||||||| || ||||| ||||| || ||||| ||||||||| Sbjct 341938 AGTATCGAAAATGTCAAGCAAAAGATCCAAGACAAGGAAGGTATTCCTCCTGACCAGCAA 341997 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGG 178078 || ||||| ||||| || ||||| || |||||||| Sbjct 341998 CGTCTTATTTTCGCTGGTAAACAACTTGAAGATGG 342032 >seq9 Length=817392 Score = 132 bits (146), Expect = 1e-25 Identities = 121/150 (81%), Gaps = 2/150 (1%) Strand=Plus/Minus Query 177975 AGCTCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCG 178034 || || |||||||| || |||||||| ||||||||||| ||||| ||||| || ||||| Sbjct 168731 AGTTCCGACACCATTGACAACGTCAAGCAAAAGATTCAAGACAAGGAAGGTATTCCTCCT 168672 Query 178035 GACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTG-CCGA 178093 ||||| ||||| |||||||| ||||| ||||| |||||||| || | || |||| ||| Sbjct 168671 GACCAACAACGTCTTATCTTTGCCGGTAAACAACTCGAAGACGGTCGTAC-CTTGAGCGA 168613 Query 178094 TTATAACGTCCAAAAAGAATCAACACTGCA 178123 || ||| ||||||| ||||| || || || Sbjct 168612 CTACAACATCCAAAAGGAATCTACTCTCCA 168583 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203709823990884