Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizopus_20microsporus_20var._20microsporus_20[genbank_20GCA_5F00208 3745.1_202017-04-12] 560 sequences; 24,950,816 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq70 446 2e-120 seq106 248 1e-60 seq53 111 2e-19 >seq70 Length=105670 Score = 446 bits (494), Expect = 2e-120 Identities = 1378/2115 (65%), Gaps = 40/2115 (2%) Strand=Plus/Plus Query 52838 GTACGTAGATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTT 52897 ||||| || || ||||| || || |||| || ||| || ||||| |||||||| Sbjct 2992 GTACGAAGGTAATACATGCCTGTCTTTAATCCCTTTTGCCAGCCATAAAAGTGCATACTG 3051 Query 52898 GTTAGTTTGGAATAACTCGGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATG 52957 || || || | | | || || || ||| ||| |||| | ||||||||| || || Sbjct 3052 GTGAGCTTACCAAAGTTGGGTTCAGCCATAAAGATGTTCAAACTTTGACTTTGGTCAATA 3111 Query 52958 AAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTT 53017 | || || | || |||||||| | ||||| || ||| | |||||||| | ||| Sbjct 3112 TACGCACCACGATCAGCAGCCATGTCAATGATAGTACGTTGAGAGATTTCCCAGACAGTC 3171 Query 53018 TTATAAAC-TCGCTTAATATCTTCTGGAAGGTTTGTA--TTCTGAATAGATCCACCATCT 53074 || || | || | || | | ||| | | | | ||||||||||| || || || Sbjct 3172 TTGTAGAGATCTTTCAAGTTTTGAGGGATGCTGGGCACGTTCTGAATAGACCCTCCGTCA 3231 Query 53075 ACCATAATCCTATTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGG 53134 |||| ||| | ||||| | ||||| ||||| | | ||| | | | | || Sbjct 3232 GCCATGATCATGTTCTTCACATCATCGTTCCAGAGACCCATATCGACCAGATCACGGAGT 3291 Query 53135 AGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTG 53194 | || || || | ||| |||| || || | || | || ||||| | || Sbjct 3292 AACCAAGGGTTGACCATTTGGTATTCACCTGAGAGCACACGACGGGTGTAGAAGTTGGAT 3351 Query 53195 GTATACGGTTCCACAGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATA 53254 || || ||||| | | | ||||| || | ||||||| ||| || ||||| |||||| Sbjct 3352 GTGTAAGGTTCAAAACATTCATTGAAACCGAGCATTTGAGAAGTGGAGGCAGTAGGCATA 3411 Query 53255 GGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTG--ATTTTATCTTTTAGAGGTT 53312 || || |||| | | || | | ||| ||| | | || || || || || | Sbjct 3412 GGAGCAACCAGCAGAGAGTTGCGGACACC--ATGCTTAGCAATCTTTTCCTTGAGTGCGG 3469 Query 53313 CCCAATTCCAAAGATCCGACGGTACAACNNNNNNNNNNNNNNNTTGTAGAATACCGTT-- 53370 |||| | ||| || | | ||| || ||| || ||||| || Sbjct 3470 CCCAGTCCCAGAGGTTGGTAGGTGTGACATTCCACATGTCATATTGCAGGATACCCTTGG 3529 Query 53371 --ACTGGCGTACGATCCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAA 53428 || || | | || |||| || ||||| ||||| | ||| ||||| | || || Sbjct 3530 ACACAGGGCTGC----CTTCATAGGTTTCGTAAGGTCCATACTTTTCAGCCAACTCGCAG 3585 Query 53429 CTCGCCTCTAATGCACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGAT-CTTGTGC 53487 || || | ||| | | || |||||||| ||||| | | || | | |||| || Sbjct 3586 GAGGCTTCCAGGGCAGCATGGTAGATGGTTTCAAAGATTTGAATGTTCAACTGCTTG-GC 3644 Query 53488 TTCCAGGCTATCAAATGGATAATTTAAGAGA-ATAAACGCGTCTGCTAATCCTTGAACAC 53546 ||| | ||| ||||||||| ||||| || || | ||| ||||| |||||||||| Sbjct 3645 TTCAGGTGAATCGAATGGATAACG-AAGAGCCATGAAAGTGTCGGCTAAGCCTTGAACAC 3703 Query 53547 CAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAAT 53606 | | ||| || ||||| |||||||| || || |||| ||||| | |||||| |||| Sbjct 3704 CTAAACCAATCGGTCTGTGTCTCTTGTTGGATCTTTCGGCTTCGATGACAGGATAGTAAT 3763 Query 53607 TAATATCTATAATTTTATTGAGGTTTCTGACAATTACTTTGACCACATCCTTCAGTTTGA 53666 | ||||| || || || || | |||||| || || ||| ||||| | |||||| Sbjct 3764 TGATATCGATGATCTTGTTCAAGTTTCTAGTGATAACCTTGGTAACATCGTGCAGTTTTT 3823 Query 53667 GAAAATCAAA---TTGTCCATCTATTACAAACATGTTCAATGCAATAGATGCCAGATTAC 53723 | |||||| | || || || || ||| | | || ||||| || |||| |||| Sbjct 3824 GGAAATCATACTTTTCTCTATTGATCACATAGGTAGGCAGAGCAATGGAGGCCAAGTTAC 3883 Query 53724 AAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACT 53783 | || || || |||| || | || |||| | || || || || ||||| || |||| Sbjct 3884 AGACAGCGACTTCATCAGGACTCGAGTATTCAACAATTTCTGTACACAGATTGCTGCACT 3943 Query 53784 TGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGA 53843 |||| || || || ||||| |||||||||||| ||||||| ||||||||||| || |||| Sbjct 3944 TGATCGTACCCAAGTTTTGCTGATTACTCTTTCTGTTACAAGCATCCTTATAGAGTATGA 4003 Query 53844 ATGGCGTACCAGTTTCAATCTGGGATTCTATAATCGCTTTCCAGACGACACGAGCCTTTA 53903 |||| | || || || | || | ||| | ||| || | ||| | ||||||| | Sbjct 4004 ATGGATTGCCTGTCTCCGTTTGAGCTTCCAAAATGGCATACCACAGCTTTTGAGCCTTGA 4063 Query 53904 TTATAGATTTGTATCTCTT--TTCTCTTTCGTATAGTGTATACAATCGTTCAAACTCGTC 53961 | | | | || ||||| ||| | ||||||| | ||| | |||||||||| Sbjct 4064 TCGTT--TCTCTAGCTCTTCCTTCACGTTCGTATTTTTCATAGAGAGCAACAAACTCGTC 4121 Query 53962 TCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTC 54021 ||||| | | | ||||||||| |||| ||||| | || ||||| || || | Sbjct 4122 ACCCCAGATTTCATGTAATCCAGGAGCCTCATTGGGACAAAACAGAGACCAATCACCACC 4181 Query 54022 ATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA-AATAGATCTCTGG 54080 || | || || | ||| || |||||||||||||| ||||| ||| || ||||| | | Sbjct 4182 GTCTCTGACACGCTGCATGAAAAGATCAGGAATCCAGAGAGC-ATAGAACAGATCACGAG 4240 Query 54081 TTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAAT 54140 || ||| || || || || ||| | || | || | | ||| || | || Sbjct 4241 CCCTGATTTCGTCTTTGCCAAAGTTTTTTCGCAAGTCTAAAAAGGTAAAAATGTCTGCAT 4300 Query 54141 GCCACGGTTCCAAGTATATGGTCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGT 54200 |||| ||||||||||| || | | | || || || || || || || ||||| | | Sbjct 4301 GCCAAGGTTCCAAGTACATTGCGAATGCGCCCGGACGCTTATTACCACCTTGATCGACAT 4360 Query 54201 ATCTAGCGGTGTTATTATAAACTCTCAACATTGG-AATAATACCATTGGATGCACCATTG 54259 | | ||| || || || |||| | | ||| || || ||| || ||||| ||| ||| Sbjct 4361 AACGAGCCGTATTGTTGAAAACACGTAGCATGGGCAACAAT-CCGTTGGAGTAACCGTTG 4419 Query 54260 GTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGATAGACCTATCCCCCCT 54319 || |||| || || |||||| |||||||| || ||| || || || || ||| Sbjct 4420 GTGCCGGCAATGTATGATCCACTAGCACGAATGTTGTGAATGTTTAAGCCAATACCGCCT 4479 Query 54320 GCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCA 54379 || | || |||||| || || ||| | ||| |||||||| || || || ||| Sbjct 4480 GCTGTCTTGGAGATTTGAGCACAGATTTTGAGCGTCTCATAGATACCTTCGATCGAATCT 4539 Query 54380 TCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAAT 54439 || ||||| | || | || || |||||| ||| ||||| || || ||||||||| Sbjct 4540 TCTTTCATGGTGAGCAAGAAGCAAGAAGACATCTGGGGACGAGGTGTGCCTGCATTAAAT 4599 Query 54440 AAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCGATAGCT 54499 | |||||| |||||| ||||| || |||| || | | ||||| ||||| |||||| Sbjct 4600 AGAGTAGGACTAGCGTGTGTAAAGTATCTTTCGGACATCAAGTTGTATGTCTCAATAGCT 4659 Query 54500 GAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTT 54559 | || ||||| | ||| || || | || |||||||| | || |||||||| | | Sbjct 4660 GCATCAATATCGGTTCCATGGATACCGATCGCAACACGCATGATCAAATGCTGAGGACGT 4719 Query 54560 TCAACGATCTTGTTGTTTATTTTCAGCAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAA 54619 || | |||||| || || || || | ||| || || | |||||| |||||||| Sbjct 4720 TCGGCAATCTTGCCGTCAATCTTGAGAAGGTAAGAACGCTCGAGAGTTTTGAAACCAAAG 4779 Query 54620 TAGTTGTA--TGAAAAGTCTCGTTCGTAAATAATAACTGAGTT---GAGTTTATCCTTAT 54674 ||||||| ||||| || || || || || || | ||||| | | | | | |||| Sbjct 4780 AAGTTGTACTTGAAA--TCACGGTCATAGATGATGGCAGAGTTCAAGCGGTCAGCGTTAT 4837 Query 54675 ATTTGTTAACTACATCCATGGTAATACTTGAAATAATCGGAGAATGTTTCCCATTTTTAG 54734 || |||| | | || | | || || || || || ||||| || | || | Sbjct 4838 CCATGACAACTTTGTAC---GTTTCATTAGAGATCATGGGTGAGTGTTTGCCTGTCTTGG 4894 Query 54735 GATTGACATAGTTAAATAAATCCTTCATCACTTCACTAAATAGtttttttGTTTCTTTGT 54794 |||| ||||| || | || || | || |||| | ||| | ||||| ||||| |||| Sbjct 4895 GATTCACATAATTGTACAAGTCTTCAATTACTTGAGAAAAGACCTTTTTGGTTTCCTTGT 4954 Query 54795 GTAGATTTGATACGGCTATTCTAGCGGCTAGAATGGCATAATCCGGATGTTGTGTAGTAC 54854 | ||||| || | ||| || | || || | | |||||||| ||||| | || || Sbjct 4955 GAAGATTAGAAATGGCAATGCGCGCAGCCAACAGAGCATAATCAGGATGGCGAGTGGTCA 5014 Query 54855 AAGTGGCTGCTATTTCGGCTGTCAGAGTGTCCAATTCTACCGTTGTTACTCCATTATATA 54914 | || ||| |||| || | || | || | ||| || ||||| || || | |||| Sbjct 5015 TATAAGCAGCTGTTTCTGCAGCAAGGTTATCGAGTTCGACAGTTGTAACACCTTGGTATA 5074 Query 54915 TTCCTTGGATAACCT 54929 || |||||||| Sbjct 5075 CACCAGAGATAACCT 5089 >seq106 Length=79482 Score = 248 bits (274), Expect = 1e-60 Identities = 564/838 (67%), Gaps = 19/838 (2%) Strand=Plus/Plus Query 23859 ACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATGATATATTTTCCATGAAATCGGAT 23918 ||||| ||||| || || || || || |||| | || || | ||||| || || || Sbjct 37116 ACACGCTTTTCAAAGAAGTTGGTCTTGCCTTGGAGAGAGATCATGTCCATAAAGTCAAAT 37175 Query 23919 GGATTGGTAACATTATAGATTCTTTTAAATCCCAATT-CAGAAATCAATCTATCTGCGAC 23977 ||||| ||| | | || || ||| | | ||||| || || | | ||| || || Sbjct 37176 GGATTAGTAGCCATGTAAAT-CTTGTCGAACCCAAGAGCAACCATGAGACGATCAGCAAC 37234 Query 23978 AAACTCCATATATGTTTTCATCATTTCACAATTCATTCCTATAAGTTTAACTGGAAGAGC 24037 || || || ||| ||||| || ||||||| || || || ||| |||||||| Sbjct 37235 GAATTCAATGTATTGACACATCAAGGCAGAATTCATGCCAATGAGAGCAACGGGAAGAGC 37294 Query 24038 CACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAATAGATCTTACTGTTTC 24097 | || | ||||||||||||||| ||| || || || ||| | || ||| Sbjct 37295 ATCCGTCAAAAATTCTTGTTCAATGCTGACAGCTTCCAAGATGATATCCTTGACGCGTTC 37354 Query 24098 TTCACTCGGTGGAT-ACAATAAATGTTTAAACATCAAACATGCGAAATCGCAGTGTAGAC 24156 || || || | | || | | || |||| | | ||| || || || || |||| Sbjct 37355 TTGGCTAGGACGCTTACGA-AGGTGGGTAAATAAAAGACAAGCAAAGTCAGTATGAAGAC 37413 Query 24157 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 24216 | || || | || || ||||| ||| || || | |||||||| | ||||| || | Sbjct 37414 CTTCATCACGACAGATCAATTCATTGCTGAATGTCAAACCGGGCATCAAACCACGTTTCT 37473 Query 24217 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 24276 | |||||||| ||||| ||||| || ||||| ||||| || ||||| || || ||||||| Sbjct 37474 TGAGCCAAAAGATGGAAGCAAAGGAACCAGAGAAGAAGATACCTTCGACAGCAGCAAAGG 37533 Query 24277 CAATAAGTCTTTCTCCATA---ACCGGCGCTGTCATGTA-TCCACTTTTGAGCCCAATCG 24332 ||| ||| | || || | |||| | | | | | ||||||| |||||||| Sbjct 37534 CAACAAGGCGCTCAGCAAAGGAACCG----TTTGAGGAAATCCACTTGAAGGCCCAATCA 37589 Query 24333 GCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGATAGtttttttCATTA 24392 ||||| | || | |||||| || || || |||||| |||||| | ||| || | Sbjct 37590 GCCTTTCTCTTGATACAAGGGATAGTGTCAATAGCAGAAAAGAGCATTTCTTTCTCTTGG 37649 Query 24393 CTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATG 24452 ||||||| | ||| || |||||||||||||| || |||| | |||||||||||||| Sbjct 37650 TTATCTTTGATATAAGTGTCAATCAAAAGACTGTAAGTTTCTGCGTGAATGTTTTCAATC 37709 Query 24453 GCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTATACAAAATCGT 24512 |||||||| || ||||||||| |||| || | ||||| ||||| |||||| || Sbjct 37710 ATGATTTGAAAGCCATAGAAACATTTAGCTTCAGGAATCTTGACTTCATCACAAAA--GT 37767 Query 24513 TCTG--CTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTT 24570 | || | || |||||||| || || || || | ||||| || ||||| ||| | Sbjct 37768 TTTGAACCAAGTTTTCATTAACAATGCCATCTGAACCAGCAAAGAAGGCCAAGACACGAG 37827 Query 24571 TTATAAAATATTTTTCGTCTGGTGTTAGTTTATT---CCAATCATTGATATCTTTAGATA 24627 ||||| | ||| | | || | ||| || |||||||| | ||| || | Sbjct 37828 AGATAAAGAAACGTTCATTTTCGGTCATTTTGTTTTCCCAATCATGAAGATCCTTGCTCA 37887 Query 24628 TATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGAT 24685 ||| | |||||| |||||||||| || || || || |||||||| | | |||||| Sbjct 37888 AATCGATTTCTTCAGCTGTCCAAAAGGAAGCTTCAGCTTTTTTATAGAATTGCCAGAT 37945 >seq53 Length=125223 Score = 111 bits (122), Expect = 2e-19 Identities = 277/420 (66%), Gaps = 3/420 (1%) Strand=Plus/Minus Query 52846 ATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTTGTTAGTTT 52905 ||||||||| || || ||||| || |||| | ||||| |||||| || | ||| Sbjct 93110 ATAGTACATGCCAGTCTTTAGTCCCTTCTTCCAGGCATAAAAGTGCATAGAAGTCAATTT 93051 Query 52906 GGAATAACTCGGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCC 52965 | | | | || || || || | ||||||||||||| |||||| || |||||||| Sbjct 93050 GCCAAAGTTTGGTTCGGCAGTAAATAAATTCATAGATTGAGATTGATCAATAAAGGCTCC 92991 Query 52966 CCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAAC 53025 || || || ||||| | || || || |||||| ||| ||||| | || || || | Sbjct 92990 TCTATCAGCGGCCATGTCAATAATAGTTCTTTGTGAAATCTCCCACACGGTCTTGTATAG 92931 Query 53026 TCGCTTAATATCTTCTGGAAGGTTTG---TATTCTGAATAGATCCACCATCTACCATAAT 53082 | || | ||| || |||| | | || ||| ||| || |||| | || || Sbjct 92930 TTTTTTGAGATCATCAGGAATGCCAGGAATACGCTGGATACTACCGCCATGAGCGATCAT 92871 Query 53083 CCTATTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGG 53142 | | |||||||| | |||||||||||| | || | | | | | | | |||| | Sbjct 92870 CATGTTCTTGATGTTATCATTCCATAAATCGAGTTCAATGAGATCATTCAATAAATGCTG 92811 Query 53143 ATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGG 53202 || |||| ||| ||||| || || | || || |||||||| || || || || Sbjct 92810 GTTGACTATTTGGAATTCACCGCTTTGAACACGACGCGTATAAATATTGCTAGTGTAAGG 92751 Query 53203 TTCCACAGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCAC 53262 || | | || ||||| ||||| |||||| ||| ||||| |||||||| || || Sbjct 92750 CTCGAAGCATTCGTTATTACCCAATATTTGACTAGTGCTAGCAGTAGGCATAGGAGCAAC 92691 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593717443948800