Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizopus_20microsporus_20var._20microsporus_20[genbank_20GCA_5F00208 3745.1_202017-04-12] 560 sequences; 24,950,816 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq106 104 2e-17 seq165 84.2 2e-11 >seq106 Length=79482 Score = 104 bits (114), Expect = 2e-17 Identities = 222/329 (67%), Gaps = 2/329 (1%) Strand=Plus/Minus Query 117027 CCTTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTT 117086 |||| | |||||||| || ||||| || || ||||| || ||||||| || || | Sbjct 37554 CCTTTGCTGAGCGCCTTGTTGCCTTTGCTGCTGTCGAAGGTATCTTCTTCTCTGGTTCCT 37495 Query 117087 TCGCCGCCATATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACG 117146 | || |||| ||||||||||||||||| || | |||||||| |||| |||||||| | Sbjct 37494 TTGCTTCCATCTTTTGGCTCAAGAAACGTGGTTTGATGCCCGGTTTGACATTCAGCAATG 37435 Query 117147 AGCTCATCTCCAGGGACGAGGGTCTGCATTGCGACTTTGCCTGTTTGCTGTTCAAGCA-T 117205 | | |||| | || || ||||| ||| |||||||| ||| | | || | || Sbjct 37434 AATTGATCTGTCGTGATGAAGGTCTTCATACTGACTTTGCTTGTCTTTTATTTACCCACC 37375 Query 117206 TTGGTGCAGCGACCGAGCGCGGCGCGCGTCAGGGAGATCGTCACCGACGCGGTCGCCATC 117265 || || |||| || ||| | ||||||| ||| ||| || || || ||| ||| Sbjct 37374 TTCGT-AAGCGTCCTAGCCAAGAACGCGTCAAGGATATCATCTTGGAAGCTGTCAGCATT 37316 Query 117266 GAGCAGCGCTTCCTCACCGAAGCGCTGCCGGTGCGTCTGCTGGGACTCAATTGCGAAACG 117325 || || || | || || || || || || ||| | || | |||| | | Sbjct 37315 GAACAAGAATTTTTGACGGATGCTCTTCCCGTTGCTCTCATTGGCATGAATTCTGCCTTG 37256 Query 117326 ATGTCGCAATACATCGAGTTCGTCGCCGA 117354 |||| |||||||| || ||||| || || Sbjct 37255 ATGTGTCAATACATTGAATTCGTTGCTGA 37227 >seq165 Length=49949 Score = 84.2 bits (92), Expect = 2e-11 Identities = 102/138 (74%), Gaps = 1/138 (1%) Strand=Plus/Minus Query 40761 AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCAT 40820 |||| ||||| |||| |||| ||||| || || || || | ||||| ||||| || || Sbjct 37982 AACG-TCAAGCAAAAGATTCAAGACAAGGAAGGTATTCCTCCTGACCAACAACGTCTTAT 37924 Query 40821 CTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGA 40880 || || || ||||| || || |||| || ||| | | ||||||||||||||| ||||| Sbjct 37923 CTTTGCCGGTAAACAACTCGAAGACGGTCGTACCTTGAGCGACTACAACATCCAAAAGGA 37864 Query 40881 GGCCACGCTGCATCTAGT 40898 | || || || |||| Sbjct 37863 ATCTACTCTCCACTTAGT 37846 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515215593465600