Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizopus_20microsporus_20var._20microsporus_20[genbank_20GCA_5F00208 3745.1_202017-04-12] 560 sequences; 24,950,816 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq109 149 9e-31 seq59 122 1e-22 seq91 111 2e-19 seq11 96.9 5e-15 >seq109 Length=78937 Score = 149 bits (164), Expect = 9e-31 Identities = 171/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| ||| | |||||||| || || || || || ||| |||| | ||| | | Sbjct 18520 ATGCAAATCTTTGTCAAGACACTTACTGGAAAGACAATTACTTTAGAAGTCGAATCTTCT 18461 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || || ||| ||||||| || |||||||| || |||||||| || ||||||||| Sbjct 18460 GACACTATCGACAATGTAAAACAAAAGATTCAAGACAAGGAAGGTATTCCTCCTGATCAA 18401 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 ||| | || || ||||| || |||||| | || ||| |||| || || || ||||| Sbjct 18400 CAACGTCTCATCTTTGCTGGTAAACAACTCGAAGATGGTCGTACCCTAAGCGACTATAAC 18341 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 |||||||| ||||| ||| | || ||||| | ||| | || |||||||| Sbjct 18340 ATTCAAAAGGAATCTACTCTTCACTTGGTCCTTCGTCTCCGTGGTGGTAT 18291 >seq59 Length=120760 Score = 122 bits (134), Expect = 1e-22 Identities = 330/502 (66%), Gaps = 26/502 (5%) Strand=Plus/Plus Query 205308 ATCTACTTGTCtttttatttttaattttGGAAATGGGTTTGGTGTACGTTCTAATTGttt 205367 |||||||| | || |||||||| | || || || || ||| ||||| | ||||| Sbjct 8483 ATCTACTTTACGGTTGATTTTTAAAGTAGGGAAAGGCTTGGGTTCACGTTGAACTTGTTG 8542 Query 205368 ttttAATCCATTAATATGATTAACATATATATGTGCATTACCAATATTATGAATAAATTC 205427 || | | | | || ||||| ||||| | ||||| || || || |||| || ||||| Sbjct 8543 CTTGAGTGCGTCAAGATGATCCACATAAACATGTGTATCGCCCATTGTATGTATGAATTC 8602 Query 205428 ATATGGTTTTAAATTAGTTAAATGTGCAATCATATAAGTCAATAAACTATAACTAGCAAC 205487 | |||| | || |||| |||||||||||| ||||| | |||| ||||| Sbjct 8603 ACCAGGTTCAAGATCTGTTACATGTGCAATCATGCGTGTCAAAAGTGCATAAGAAGCAAT 8662 Query 205488 ATTAAATGGTACACCTAAACCCATATCAGCTGATCTTTGATACATTTGACATG-TAAGAT 205546 ||| || || ||||| | |||||||| || | |||||| | ||| | ||| | Sbjct 8663 ATTGAAAGGAACACCCAGTCCCATATCGCAAGAACGTTGATAGAGCACACAGGATAACTT 8722 Query 205547 AT-----------TTATTA------TTAATTACATGAAATTGTACAAAACA-ATGACAAG 205588 | | | ||| ||||| ||| || |||||| |||||||| Sbjct 8723 GGCACGCCCGCCATCCTGAGGTGGGTTAGATACATAAAACTG-ACAAAAGGCATGACAAG 8781 Query 205589 GTGGTATAACCATATTTTCAACATCTATAGGATTCCAGGCTGTTAATATTATATTTCTAG 205648 |||||| | |||| | || |||| ||| ||||| |||| || || || | | | Sbjct 8782 GTGGTAAAGCCATGATAGGAATATCTGCAGGGTTCCATGCTGATAGAATGATTCTGCGA- 8840 Query 205649 ATTCAG---GtttattttttattttatttatAATATGTGTTAATTGATCAAATCCTTGAT 205705 |||| | || |||||||| ||| || | ||| ||||||||||| ||||| Sbjct 8841 --TCAGTGGGATTGTTTTTTATAGTATCAATCACTTGTTGTAATTGATCAACGCCTTGTC 8898 Query 205706 TTGTATAATTTGTATCCATATCAATATATTTAGCACCAAAATGACGCCATTGAAAACCAT 205765 |||||||| || || |||| || || || ||||| || | ||||||||| || | Sbjct 8899 CTGTATAATCAGTGTCACAGTCAACGTACTTGGCGCCAAAGTGTCTCCATTGAAATCCGT 8958 Query 205766 AAACTGGACCTAAATCACCTTC 205787 ||||||| || | |||||||| Sbjct 8959 AAACTGGTCCAAGGTCACCTTC 8980 >seq91 Length=92626 Score = 111 bits (122), Expect = 2e-19 Identities = 127/171 (74%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||| || ||| ||| | || || || || |||||||| |||||||| || |||||||| Sbjct 70129 TGACACCATTGACAATGTCAAGCAAAAGATCCAAGATAAGGAAGGTATCCCTCCTGATCA 70070 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 |||| | || ||||| || || |||||| | || || |||| || || ||||| || Sbjct 70069 ACAACGTCTCATTTTCGCCGGTAAACAACTCGAAGACGGTCGTACCTTGAGTGATTACAA 70010 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 |||||||| ||||| || | || |||||| | ||| | || |||||||| Sbjct 70009 CATTCAAAAGGAATCTACCCTTCACTTGGTTCTCCGTCTTCGTGGTGGTAT 69959 >seq11 Length=236632 Score = 96.9 bits (106), Expect = 5e-15 Identities = 126/172 (73%), Gaps = 2/172 (1%) Strand=Plus/Plus Query 124611 AATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAACAAAGGCTTATT 124670 ||| | || || || || ||||| || |||||||| || |||||||||||| | || ||| Sbjct 28 AATGTCAAGCAAAAGATCCAAGACAAGGAAGGTATCCCTCCTGATCAACAACGTCTCATT 87 Query 124671 TTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAATATTCAAAAAGAA 124730 || || || || || | || ||| |||| || || ||||| || || ||||||||| Sbjct 88 TTCGCCGGCAAGCAGCTCGAAGATGGTCGTACTTTGAGTGATTACAACATCCAAAAAGAA 147 Query 124731 TCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGT-ATTAAAAAT-TCATA 124780 || ||| | || ||||| | ||| | || || ||| | |||| || ||||| Sbjct 148 TCTACTCTTCACTTGGTCCTTCGTCTTCGTGGCGGTCAATAAACATGTCATA 199 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 755450711808000