Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizopus_20microsporus_20var._20microsporus_20[genbank_20GCA_5F00208 3745.1_202017-04-12] 560 sequences; 24,950,816 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq106 187 2e-42 seq70 102 8e-17 >seq106 Length=79482 Score = 187 bits (206), Expect = 2e-42 Identities = 484/727 (67%), Gaps = 17/727 (2%) Strand=Plus/Plus Query 11464 ATCTGCGACGAATTCTATATACTGAGACATTAAACAACAATTCATACCTATAAGATCCAC 11523 ||| || |||||||| || || ||| |||| || | ||||||| || || ||| | || Sbjct 37226 ATCAGCAACGAATTCAATGTATTGACACATCAAGGCAGAATTCATGCCAATGAGAGCAAC 37285 Query 11524 CGGAATAGCAACTGTCAAAAACTCCTTTTCTATATTAACCGCATCAATGATTATCGACGT 11583 |||| |||| | |||||||| || | ||| || | || || || | ||| || | | Sbjct 37286 GGGAAGAGCATCCGTCAAAAATTCTTGTTCAATGCTGACAGCTTCCAAGATGATATCCTT 37345 Query 11584 TATAACTTCCTTAGAT-GGTGGATGTAATAAA-TGTTTAAACATTAAACACGCAAAATCA 11641 | ||| || | | || | | || || || |||| | | ||| ||||| ||| Sbjct 37346 GACGCGTTC-TTGGCTAGGACGCT-TACGAAGGTGGGTAAATAAAAGACAAGCAAAGTCA 37403 Query 11642 CAATGTAAACCTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAAT 11701 ||| | |||||| || | || || | |||||| ||||| || ||||||||||| Sbjct 37404 GTATGAAGACCTTCATCACGACAGATCAATTCATTGCTGAATGTCAAACCGGGCATCAAA 37463 Query 11702 CCTCGtttttttATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACA 11761 || ||||| || | |||||| || | |||||| |||||||| ||||| || || || ||| Sbjct 37464 CCACGTTTCTTGAGCCAAAAGATGGAAGCAAAGGAACCAGAGAAGAAGATACCTTCGACA 37523 Query 11762 GCTGCAAATGCTACTACTCTTTCTCCATA--TACCTTGTTGCTAGATATCCATTTTCTGG 11819 || ||||| || || | | || || | ||| ||| || ||||| || || Sbjct 37524 GCAGCAAAGGCAACAAGGCGCTCAGCAAAGGAACC--GTTTGAGGAAATCCACTTGAAGG 37581 Query 11820 CCCAATCAGCTTTCTTTTTTACGCATTCCATTGTTTCTATAGCGTTAAATAAATGCATTT 11879 |||||||||| || | || | || || || || ||||| | | || |||||| Sbjct 37582 CCCAATCAGCCTTTCTCTTGATACAAGGGATAGTGTCAATAGC---AGAAAAGAGCATTT 37638 Query 11880 -TTTCTAT--ATTATCTCTTACATATGTATCTATTAATAAACTATACATTTCTGAATGAA 11936 ||||| | |||||| | | ||| || || || || | ||| || |||||| |||| Sbjct 37639 CTTTCTCTTGGTTATCTTTGATATAAGTGTCAATCAAAAGACTGTAAGTTTCTGCGTGAA 37698 Query 11937 TATTTTCCATAGCTATTTGAAATCCATAGAAACATCGTGCCTCTGAACACTGTACATCCA 11996 | ||||| || |||||||| |||||||||||| || || | | || || || Sbjct 37699 TGTTTTCAATCATGATTTGAAAGCCATAGAAACATTTAGCTTCAGGAATCTTGACTTCAT 37758 Query 11997 CATAAAATCTTTCCGCTAAATTCTCATTTACAATACCATCACTAGATGCAAAAAATGCTA 12056 || |||| ||| | || || ||||| ||||| ||||| | ||||| || || | Sbjct 37759 CACAAAAGTTTTGAACCAAGTTTTCATTAACAATGCCATCTGAACCAGCAAAGAAGGCCA 37818 Query 12057 GTATATGTTTTATAAAGTATTTTTCGTCTTTAGTTAAT---TTATCCCAATCATCTAAAT 12113 | | | |||||| | ||| | || || | | || |||||||||| | || Sbjct 37819 AGACACGAGAGATAAAGAAACGTTCATTTTCGGTCATTTTGTTTTCCCAATCATGAAGAT 37878 Query 12114 CTTTTGATAAATCTACTTCTTCAACGGTCCAAAAACTTGCCACTGATTGTTTATACATTT 12173 | || ||||| | ||||||| | |||||||| || | | || |||||| | || Sbjct 37879 CCTTGCTCAAATCGATTTCTTCAGCTGTCCAAAAGGAAGCTTCAGCTTTTTTATAGAATT 37938 Query 12174 TCCAGAT 12180 |||||| Sbjct 37939 GCCAGAT 37945 >seq70 Length=105670 Score = 102 bits (112), Expect = 8e-17 Identities = 861/1381 (62%), Gaps = 25/1381 (2%) Strand=Plus/Plus Query 37183 GTATATGGTTCAATGGACTCATTATTACTTAATATTTGAGATGTAGATGCAGTAGGCATT 37242 || || ||||||| | ||||| || | |||||||| || || ||||||||||| Sbjct 3352 GTGTAAGGTTCAAAACATTCATTGAAACCGAGCATTTGAGAAGTGGAGGCAGTAGGCATA 3411 Query 37243 GGTGCTATTAGAAGGCTATTTCTCAATCCATGTGTATTAATTCTCTTTTTTAGTTCATTC 37302 || || | || || || | | ||||| || ||| | | || ||| | | Sbjct 3412 GGAGCAACCAGCAGAGAGTTGCGGACACCATGCTTAGCAATCTTTTCCTTGAGTGCGGCC 3471 Query 37303 CAATCCCATAAATCTGTTGGGTT--CTTTAACCACATATCATATTGTAGAATACCTTTAC 37360 || ||||| | | || || | | || |||||| |||||||| || ||||| || Sbjct 3472 CAGTCCCAGAGGTTGGTAGGTGTGACATT--CCACATGTCATATTGCAGGATACCCTTGG 3529 Query 37361 TCGCTGGAGAATCGTTATATGTCTCATAAGGTCCGTAAATTTTAGCTAGTTCGCAACTAG 37420 | | || | | ||| || || |||||||| || ||| ||| | ||||| | Sbjct 3530 ACACAGGGCTGCCTTCATAGGTTTCGTAAGGTCCATACTTTTCAGCCAACTCGCAGGAGG 3589 Query 37421 ATTCTAGTGCGGCATAATATATTGTTTCGAAAATTTGTATATTTAATATTTTTGCTTCTT 37480 ||| || || |||| || || ||||| || ||||| || || || || ||||| Sbjct 3590 CTTCCAGGGCAGCATGGTAGATGGTTTCAAAGATTTGAATGTTCAACTGCTTGGCTTCAG 3649 Query 37481 CGCTATCGAATGCATAGCCCAATAATATAAACACATCAGCCAAACCCTGAACACCGATAC 37540 |||||||| ||| | | || || || || || || |||||||| | || Sbjct 3650 GTGAATCGAATGGATAACGAAGAGCCATGAAAGTGTCGGCTAAGCCTTGAACACCTAAAC 3709 Query 37541 CTATGGGTCTATGTTTCTTATTAGATCTAGACGATTCTATCACTGGATAATAATTGATAT 37600 | || ||||| ||| |||| || ||||| | ||| || || ||||| |||||||||| Sbjct 3710 CAATCGGTCTGTGTCTCTTGTTGGATCTTTCGGCTTCGATGACAGGATAGTAATTGATAT 3769 Query 37601 CTATTATTTTATTTAGATTTTTAACTAGTATTTTCGTAATTATTCT-CAACTTGTCGAA- 37658 | || || || || | ||| || | | || |||| || | || || | ||| Sbjct 3770 CGATGATCTTGTTCAAGTTTCTAGTGATAACCTTGGTAA-CATCGTGCAGTTTTTGGAAA 3828 Query 37659 -CATA-AATACGTTATTATTAACAAATTTACTCAACGAAATAGATCCTAGATTACATACA 37716 |||| | | |||| | ||| | || || | ||| || | | ||||| ||| Sbjct 3829 TCATACTTTTCTCTATTGATCACATAGGTAGGCAGAGCAATGGAGGCCAAGTTACAGACA 3888 Query 37717 GCAACTTCATC----TTCGTTACTAAATTGTATAATCTCTGTACAGAGATTACTCGATCT 37772 || |||||||| ||| | | ||| | ||| |||||||| ||||| || | | Sbjct 3889 GCGACTTCATCAGGACTCG--AGT--ATTCAACAATTTCTGTACACAGATTGCTGCACTT 3944 Query 37773 AATTGTTCCCAAATTGCTTTGATTGGATTTTTTATTACAAGAATCTTTATATAGTATATA 37832 || || ||||| || ||||| ||| | ||||||| ||| ||||| ||||| | Sbjct 3945 GATCGTACCCAAGTTTTGCTGATTACTCTTTCTGTTACAAGCATCCTTATAGAGTATGAA 4004 Query 37833 CGGCGTTCCTTGTTCTATTTGAGCCTCGATAATAGATTTCCATAAACTTCTTG---CTTT 37889 || | ||| || ||||||| || | ||| | | ||| | ||| ||| ||| Sbjct 4005 TGGATTGCCTGTCTCCGTTTGAGCTTCCAAAATGGCATACCA-CAGCTT-TTGAGCCTTG 4062 Query 37890 AACGATCGCTTTAAtttttttCTTTGTTTCGTATTCTATATATAATTTGTTAAAATCATT 37949 | || | || || | || | |||||||| | ||| | ||| || | Sbjct 4063 ATCG-TTTCTCTAGCTCTTCCTTCACGTTCGTATTTTTCATAGAGAGCAACAAACTCGTC 4121 Query 37950 CCCCCATACATCGCATAATCCTGGACATTCGCATGGACACATTAGAGACCATTCTTCATC 38009 ||||| | || |||||| ||| || ||||| | |||||||| || || | Sbjct 4122 ACCCCAGATTTCATGTAATCCAGGAGCCTCATTGGGACAAAACAGAGACCAATCACCACC 4181 Query 38010 TTTTTCTACGCGTTCCATAAATAAATCAGGTACCCATAATGCAGTAAATAAATCTTTGGT 38069 | | || || | ||| || | |||||| | ||| | ||| || | ||| | Sbjct 4182 GTCTCTGACACGCTGCATGAAAAGATCAGGAATCCAGAGAGCATAGAACAGATCACGAGC 4241 Query 38070 TCTATATTCTTCGTTCCCTACATTCTTTCTTAAGCTTAGAAAATCGAATATATCAGCGTG 38129 || ||| || || || | || |||| ||| || ||| || || || || || Sbjct 4242 CCTGATTTCGTCTTTGCCAAAGTTTTTTCGCAAGTCTAAAAAGGTAAAAATGTCTGCATG 4301 Query 38130 CCATGGTTCTATATAAATCGACATTGCTCCTGGTCTTTTATCACCTCCCTGATTAATATA 38189 ||| ||||| | || || | | ||| || || | |||| ||| || |||| | ||| Sbjct 4302 CCAAGGTTCCAAGTACATTGCGAATGCGCCCGGACGCTTATTACCACCTTGATCGACATA 4361 Query 38190 TCTAACTGTGTTATTATATATTCTTAACATAGGTACTATACCATTAGATTTGCCGTTTAT 38249 | | | || || || | | | || ||| || | | || || || | ||||| | Sbjct 4362 ACGAGCCGTATTGTTGAAAACACGTAGCATGGGCAACAATCCGTTGGAGTAACCGTTGGT 4421 Query 38250 ACCGGATATATAAGTACCCTTAGCTCGTATATTACTTATCGACAATCCTATTCCACCTGC 38309 |||| || || | || |||| || || || || || || || || ||||| Sbjct 4422 GCCGGCAATGTATGATCCACTAGCACGAATGTTGTGAATGTTTAAGCCAATACCGCCTGC 4481 Query 38310 ATGT-TTTGATATTAAAGCGCATTGTTTTAACGTATCAAATATACCTTCTATACTGTCAT 38368 ||| || || ||| ||| || ||| | ||| ||| | |||||||| || || | Sbjct 4482 -TGTCTTGGAGATTTGAGCACAGATTTTGAGCGTCTCATAGATACCTTCGATCGAATCTT 4540 Query 38369 CCTTTATTGGTAGTATAAAACAACTAGACATTTGAGGCAATGGAGTTCCGGCGTTAAATA 38428 | || || | || | || ||| |||||| || || || || || || ||||||| Sbjct 4541 CTTTCATGGTGAGCAAGAAGCAAGAAGACATCTGGGGACGAGGTGTGCCTGCATTAAATA 4600 Query 38429 ATGTAGGAGATGCATGTATGAACCATTTTTCCGACAAATAATTATATGTTTCTATTACAT 38488 |||||| || ||| | || || |||| |||| | || ||||| || || | Sbjct 4601 GAGTAGGACTAGCGTGTGTAAAGTATCTTTCGGACATCAAGTTGTATGTCTCAATAGCTG 4660 Query 38489 CATCTATATCACCGCCGTGAATACCTAGAGATACCCTCATTAGCATATGTTGTGGTCTTT 38548 |||| ||||| || || ||||| | | || | ||| | || ||| || || | || Sbjct 4661 CATCAATATCGGTTCCATGGATACCGATCGCAACACGCATGATCAAATGCTGAGGACGTT 4720 Query 38549 C 38549 | Sbjct 4721 C 4721 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468521520326400