Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizopus_20microsporus_20var._20microsporus_20[genbank_20GCA_5F00208 3745.1_202017-04-12] 560 sequences; 24,950,816 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq70 452 5e-122 seq106 268 1e-66 seq53 111 2e-19 >seq70 Length=105670 Score = 452 bits (500), Expect = 5e-122 Identities = 1380/2115 (65%), Gaps = 40/2115 (2%) Strand=Plus/Plus Query 64869 GTACGTAGATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTC 64928 ||||| || || ||||| || || |||| || ||| || ||||| |||||||| Sbjct 2992 GTACGAAGGTAATACATGCCTGTCTTTAATCCCTTTTGCCAGCCATAAAAGTGCATACTG 3051 Query 64929 GTTAGTTTGGAATAACTCGGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATG 64988 || || || | | | || || || ||| ||| |||| | ||||||||| || || Sbjct 3052 GTGAGCTTACCAAAGTTGGGTTCAGCCATAAAGATGTTCAAACTTTGACTTTGGTCAATA 3111 Query 64989 AAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTT 65048 | || || | || |||||||| | ||||| || ||| | |||||||| | ||| Sbjct 3112 TACGCACCACGATCAGCAGCCATGTCAATGATAGTACGTTGAGAGATTTCCCAGACAGTC 3171 Query 65049 TTATAAAC-TCGCTTAATATCTTCTGGAAGGTTTGTA--TTCTGAATGGATCCACCATCT 65105 || || | || | || | | ||| | | | | |||||||| || || || || Sbjct 3172 TTGTAGAGATCTTTCAAGTTTTGAGGGATGCTGGGCACGTTCTGAATAGACCCTCCGTCA 3231 Query 65106 GCCATAATCCTATTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGG 65165 ||||| ||| | ||||| | ||||| ||||| | | ||| | | | | || Sbjct 3232 GCCATGATCATGTTCTTCACATCATCGTTCCAGAGACCCATATCGACCAGATCACGGAGT 3291 Query 65166 AGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTG 65225 | || || || | ||| |||| || || | || | || ||||| | || Sbjct 3292 AACCAAGGGTTGACCATTTGGTATTCACCTGAGAGCACACGACGGGTGTAGAAGTTGGAT 3351 Query 65226 GTATACGGTTCCACAGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATA 65285 || || ||||| | | | ||||| || | ||||||| ||| || ||||| |||||| Sbjct 3352 GTGTAAGGTTCAAAACATTCATTGAAACCGAGCATTTGAGAAGTGGAGGCAGTAGGCATA 3411 Query 65286 GGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTG--ATTTTATCTTTTAGAGGTT 65343 || || |||| | | || | | ||| ||| | | || || || || || | Sbjct 3412 GGAGCAACCAGCAGAGAGTTGCGGACACC--ATGCTTAGCAATCTTTTCCTTGAGTGCGG 3469 Query 65344 CCCAATTCCAAAGATCCGACGGTACAACNNNNNNNNNNNNNNNTTGTAGAATACCGTT-- 65401 |||| | ||| || | | ||| || ||| || ||||| || Sbjct 3470 CCCAGTCCCAGAGGTTGGTAGGTGTGACATTCCACATGTCATATTGCAGGATACCCTTGG 3529 Query 65402 --ACTGGCGTACGATCCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAA 65459 || || | | || |||| || ||||| ||||| | ||| ||||| | || || Sbjct 3530 ACACAGGGCTGC----CTTCATAGGTTTCGTAAGGTCCATACTTTTCAGCCAACTCGCAG 3585 Query 65460 CTCGCCTCTAATGCACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGAT-CTTGTGC 65518 || || | ||| | | || |||||||| ||||| | | || | | |||| || Sbjct 3586 GAGGCTTCCAGGGCAGCATGGTAGATGGTTTCAAAGATTTGAATGTTCAACTGCTTG-GC 3644 Query 65519 TTCCAGGCTATCAAATGGATAATTTAAGAGA-ATAAACGCGTCTGCTAATCCTTGAACAC 65577 ||| | ||| ||||||||| ||||| || || | ||| ||||| |||||||||| Sbjct 3645 TTCAGGTGAATCGAATGGATAACG-AAGAGCCATGAAAGTGTCGGCTAAGCCTTGAACAC 3703 Query 65578 CAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAAT 65637 | | ||| || ||||| |||||||| || || |||| ||||| | |||||| |||| Sbjct 3704 CTAAACCAATCGGTCTGTGTCTCTTGTTGGATCTTTCGGCTTCGATGACAGGATAGTAAT 3763 Query 65638 TAATATCTATAATTTTATTGAGATTTCTGACAATTACTTTGACCACATCCTTCAGTTTGA 65697 | ||||| || || || || | ||||| || || ||| ||||| | |||||| Sbjct 3764 TGATATCGATGATCTTGTTCAAGTTTCTAGTGATAACCTTGGTAACATCGTGCAGTTTTT 3823 Query 65698 GAAAATCAAA--TCGCTC-ATCTATTACAAACATGTTCAATGCAACAGATGCCAGATTAC 65754 | |||||| | | ||| || || ||| | | || |||| || |||| |||| Sbjct 3824 GGAAATCATACTTTTCTCTATTGATCACATAGGTAGGCAGAGCAATGGAGGCCAAGTTAC 3883 Query 65755 AAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACT 65814 | || || || |||| || | || |||| | || || || || ||||| || |||| Sbjct 3884 AGACAGCGACTTCATCAGGACTCGAGTATTCAACAATTTCTGTACACAGATTGCTGCACT 3943 Query 65815 TGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGA 65874 |||| || || || ||||| |||||||||||| ||||||| ||||||||||| || |||| Sbjct 3944 TGATCGTACCCAAGTTTTGCTGATTACTCTTTCTGTTACAAGCATCCTTATAGAGTATGA 4003 Query 65875 ATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTA 65934 ||||| | || || || | |||| ||| | ||| || | ||| | | ||||||| | Sbjct 4004 ATGGATTGCCTGTCTCCGTTTGAGCTTCCAAAATGGCATACCACAGCTTTTGAGCCTTGA 4063 Query 65935 TTATAGATTTGTATCTCTT--TTCTCTTTCGTATAGTGTATACAATCGTTCGAACTCGTC 65992 | | | | || ||||| ||| | ||||||| | ||| | | |||||||| Sbjct 4064 TCGT--TTCTCTAGCTCTTCCTTCACGTTCGTATTTTTCATAGAGAGCAACAAACTCGTC 4121 Query 65993 TCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTC 66052 ||||| | | | ||||||||| |||| ||||| | || ||||| || || | Sbjct 4122 ACCCCAGATTTCATGTAATCCAGGAGCCTCATTGGGACAAAACAGAGACCAATCACCACC 4181 Query 66053 ATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA-AATAAATCTCTGG 66111 || | || || | ||| || |||||||||||||| ||||| ||| || | ||| | | Sbjct 4182 GTCTCTGACACGCTGCATGAAAAGATCAGGAATCCAGAGAGC-ATAGAACAGATCACGAG 4240 Query 66112 TTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCATAAT 66171 || ||| || || || || ||| | || | || | | ||| || || Sbjct 4241 CCCTGATTTCGTCTTTGCCAAAGTTTTTTCGCAAGTCTAAAAAGGTAAAAATGTCTGCAT 4300 Query 66172 GCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGT 66231 |||| ||||||||||| || || | | || || || || || || || ||||| | | Sbjct 4301 GCCAAGGTTCCAAGTACATTGCGAATGCGCCCGGACGCTTATTACCACCTTGATCGACAT 4360 Query 66232 ATCTAGCGGTGTTATTATAAACTCTCAACATTGG-AATAATACCATTGGATGTACCATTG 66290 | | ||| || || || |||| | | ||| || || ||| || ||||| ||| ||| Sbjct 4361 AACGAGCCGTATTGTTGAAAACACGTAGCATGGGCAACAAT-CCGTTGGAGTAACCGTTG 4419 Query 66291 GTCCCGGAGATATAGCTTCCACTTGCACGAATATTACTAATTGATAGACCTATTCCCCCT 66350 || |||| || || |||||| |||||||| || ||| || || || || ||| Sbjct 4420 GTGCCGGCAATGTATGATCCACTAGCACGAATGTTGTGAATGTTTAAGCCAATACCGCCT 4479 Query 66351 GCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCA 66410 || | || |||||| || || ||| | ||| |||||||| || || || ||| Sbjct 4480 GCTGTCTTGGAGATTTGAGCACAGATTTTGAGCGTCTCATAGATACCTTCGATCGAATCT 4539 Query 66411 TCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAAT 66470 || ||||| | || | || || |||||| ||| ||||| || || ||||||||| Sbjct 4540 TCTTTCATGGTGAGCAAGAAGCAAGAAGACATCTGGGGACGAGGTGTGCCTGCATTAAAT 4599 Query 66471 AAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCT 66530 | |||||| |||||| ||||| || |||| || | | ||||| |||||||||||| Sbjct 4600 AGAGTAGGACTAGCGTGTGTAAAGTATCTTTCGGACATCAAGTTGTATGTCTCAATAGCT 4659 Query 66531 GAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTT 66590 | || ||||| | ||| || || | || |||||||| | || |||||||| | | Sbjct 4660 GCATCAATATCGGTTCCATGGATACCGATCGCAACACGCATGATCAAATGCTGAGGACGT 4719 Query 66591 TCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAA 66650 || | |||||| || || || | | ||| || || | |||||| |||||||| Sbjct 4720 TCGGCAATCTTGCCGTCAATCTTGAGAAGGTAAGAACGCTCGAGAGTTTTGAAACCAAAG 4779 Query 66651 TAGTTGTA--TGAAAAGTCTCGTTCGTAAATAATAACCGAGTT---GAGTTTATCCTTAT 66705 ||||||| ||||| || || || || || || | ||||| | | | | | |||| Sbjct 4780 AAGTTGTACTTGAAA--TCACGGTCATAGATGATGGCAGAGTTCAAGCGGTCAGCGTTAT 4837 Query 66706 ATTTGTTAACTACATCCATGGTAATACTTGAAATAATCGGAGAATGTTTCCCATTTTTAG 66765 || |||| | | || | | || || || || || ||||| || | || | Sbjct 4838 CCATGACAACTTTGTAC---GTTTCATTAGAGATCATGGGTGAGTGTTTGCCTGTCTTGG 4894 Query 66766 GATTGACATAGTTGAATAAATCCTCCATCACTTCACTAAATAGtttttttGTTTCTTTGT 66825 |||| ||||| ||| | || || || || |||| | ||| | ||||| ||||| |||| Sbjct 4895 GATTCACATAATTGTACAAGTCTTCAATTACTTGAGAAAAGACCTTTTTGGTTTCCTTGT 4954 Query 66826 GTAGATTTGATACGGCTATTCTAGCGGCTATAATGGCATAATCCGGATGTTGTGTAGTAC 66885 | ||||| || | ||| || | || || | | |||||||| ||||| | || || Sbjct 4955 GAAGATTAGAAATGGCAATGCGCGCAGCCAACAGAGCATAATCAGGATGGCGAGTGGTCA 5014 Query 66886 AAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAATTCTACCGTTGTTACTCCATTATATA 66945 | || ||| |||| || || || | || | ||| || ||||| || || | |||| Sbjct 5015 TATAAGCAGCTGTTTCTGCAGCAAGGTTATCGAGTTCGACAGTTGTAACACCTTGGTATA 5074 Query 66946 TTCCTTGGATAACCT 66960 || |||||||| Sbjct 5075 CACCAGAGATAACCT 5089 >seq106 Length=79482 Score = 268 bits (296), Expect = 1e-66 Identities = 566/836 (68%), Gaps = 15/836 (2%) Strand=Plus/Plus Query 35882 ACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATGATATATTTTCCATGAAATCGAAT 35941 ||||| ||||| || || || || || |||| | || || | ||||| || || ||| Sbjct 37116 ACACGCTTTTCAAAGAAGTTGGTCTTGCCTTGGAGAGAGATCATGTCCATAAAGTCAAAT 37175 Query 35942 GGATTGATAACATTATAAAtttttttAAATCCCAATTCAGAAATCAATCTATCTGCGACA 36001 ||||| || | | ||||| || | || || | || || | | ||| || || Sbjct 37176 GGATTAGTAGCCATGTAAATCTTGTCGAACCCAAGAGCAACCATGAGACGATCAGCAACG 37235 Query 36002 AATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGTTTAACTGGAAGAGCC 36061 ||||| || ||| ||||| || ||||||| || || || ||| |||||||| Sbjct 37236 AATTCAATGTATTGACACATCAAGGCAGAATTCATGCCAATGAGAGCAACGGGAAGAGCA 37295 Query 36062 ACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAATAGATATTACTGTTTCT 36121 | || | ||||||||||||||| ||| || || || ||| | || |||| Sbjct 37296 TCCGTCAAAAATTCTTGTTCAATGCTGACAGCTTCCAAGATGATATCCTTGACGCGTTCT 37355 Query 36122 TCACTCGGTGGAT-ACAATAAATGTTTAAACATCAAACATGCGAAATCGCAGTGTAGACC 36180 | || || | | || | | || |||| | | ||| || || || || ||||| Sbjct 37356 TGGCTAGGACGCTTACGA-AGGTGGGTAAATAAAAGACAAGCAAAGTCAGTATGAAGACC 37414 Query 36181 CTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTT 36240 || || | || || ||||| ||| || || | |||||||| | ||||| || || Sbjct 37415 TTCATCACGACAGATCAATTCATTGCTGAATGTCAAACCGGGCATCAAACCACGTTTCTT 37474 Query 36241 AAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGC 36300 |||||||| ||||| ||||| || ||||| ||||| || ||||| || || |||||||| Sbjct 37475 GAGCCAAAAGATGGAAGCAAAGGAACCAGAGAAGAAGATACCTTCGACAGCAGCAAAGGC 37534 Query 36301 AATAAGTCTCTCTCCATAACCGGCACTGTC--ATGTA-TCCACTTTTGAGCCCAATCGGC 36357 || ||| | ||| || | || || || | | | ||||||| |||||||| || Sbjct 37535 AACAAGGCGCTCAGCAAA---GGAACCGTTTGAGGAAATCCACTTGAAGGCCCAATCAGC 37591 Query 36358 CTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGATAGtttttttCATTACT 36417 ||| | || | |||||| || || || |||||| |||||| | ||| || | | Sbjct 37592 CTTTCTCTTGATACAAGGGATAGTGTCAATAGCAGAAAAGAGCATTTCTTTCTCTTGGTT 37651 Query 36418 ATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 36477 |||||| | ||| || |||||||||||||| || |||| | |||||||||||||| Sbjct 37652 ATCTTTGATATAAGTGTCAATCAAAAGACTGTAAGTTTCTGCGTGAATGTTTTCAATCAT 37711 Query 36478 CATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTC 36537 |||||||| || ||||||||| |||| || | ||||| ||||| |||||| ||| Sbjct 37712 GATTTGAAAGCCATAGAAACATTTAGCTTCAGGAATCTTGACTTCATCACAAAA--GTTT 37769 Query 36538 TG--CTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTT 36595 || | || |||||||| || || || || | ||||| || ||||| ||| | Sbjct 37770 TGAACCAAGTTTTCATTAACAATGCCATCTGAACCAGCAAAGAAGGCCAAGACACGAGAG 37829 Query 36596 ATAAAATATTTTTCGTTTGGTGTTAGTTTATT---CCAATCATTGATATCTTTAGATATA 36652 ||||| | ||| ||| || | ||| || |||||||| | ||| || | | Sbjct 37830 ATAAAGAAACGTTCATTTTCGGTCATTTTGTTTTCCCAATCATGAAGATCCTTGCTCAAA 37889 Query 36653 TCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGAT 36708 || | |||||| |||||||||| || || || || |||||||| | | |||||| Sbjct 37890 TCGATTTCTTCAGCTGTCCAAAAGGAAGCTTCAGCTTTTTTATAGAATTGCCAGAT 37945 >seq53 Length=125223 Score = 111 bits (122), Expect = 2e-19 Identities = 277/420 (66%), Gaps = 3/420 (1%) Strand=Plus/Minus Query 64877 ATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTT 64936 ||||||||| || || ||||| || |||| | ||||| |||||| || | ||| Sbjct 93110 ATAGTACATGCCAGTCTTTAGTCCCTTCTTCCAGGCATAAAAGTGCATAGAAGTCAATTT 93051 Query 64937 GGAATAACTCGGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCC 64996 | | | | || || || || | ||||||||||||| |||||| || |||||||| Sbjct 93050 GCCAAAGTTTGGTTCGGCAGTAAATAAATTCATAGATTGAGATTGATCAATAAAGGCTCC 92991 Query 64997 CCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAAC 65056 || || || ||||| | || || || |||||| ||| ||||| | || || || | Sbjct 92990 TCTATCAGCGGCCATGTCAATAATAGTTCTTTGTGAAATCTCCCACACGGTCTTGTATAG 92931 Query 65057 TCGCTTAATATCTTCTGGAAGGTTTG---TATTCTGAATGGATCCACCATCTGCCATAAT 65113 | || | ||| || |||| | | || ||| || || |||| || || || Sbjct 92930 TTTTTTGAGATCATCAGGAATGCCAGGAATACGCTGGATACTACCGCCATGAGCGATCAT 92871 Query 65114 CCTATTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGG 65173 | | |||||||| | |||||||||||| | || | | | | | | | |||| | Sbjct 92870 CATGTTCTTGATGTTATCATTCCATAAATCGAGTTCAATGAGATCATTCAATAAATGCTG 92811 Query 65174 ATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGG 65233 || |||| ||| ||||| || || | || || |||||||| || || || || Sbjct 92810 GTTGACTATTTGGAATTCACCGCTTTGAACACGACGCGTATAAATATTGCTAGTGTAAGG 92751 Query 65234 TTCCACAGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCAC 65293 || | | || ||||| ||||| |||||| ||| ||||| |||||||| || || Sbjct 92750 CTCGAAGCATTCGTTATTACCCAATATTTGACTAGTGCTAGCAGTAGGCATAGGAGCAAC 92691 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658168192790400