Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizopus_20microsporus_20var._20microsporus_20[genbank_20GCA_5F00208 3745.1_202017-04-12] 560 sequences; 24,950,816 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq109 122 9e-23 seq70 122 9e-23 seq91 102 8e-17 seq11 98.7 1e-15 >seq109 Length=78937 Score = 122 bits (134), Expect = 9e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | ||| | || ||||||| ||||| || |||||||||||||| ||||| Sbjct 18294 CCACCACGGAGACGAAGGACCAAGTGAAGAGTAGATTCCTTTTGAATGTTATAGTCGCTT 18353 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || | |||||||| |||||||||||| |||| |||||||| ||||| ||||| Sbjct 18354 AGGGTACGACCATCTTCGAGTTGTTTACCAGCAAAGATGAGACGTTGTTGATCAGGAGGA 18413 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 || ||||| ||||| || |||||||||| | || | ||||| | | || || Sbjct 18414 ATACCTTCCTTGTCTTGAATCTTTTGTTTTACATTGTCGATAGTGTCAGAAGATTCGACT 18473 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 || | || | ||||| || || | || || || || |||||||| Sbjct 18474 TCTAAAGTAATTGTCTTTCCAGTAAGTGTCTTGACAAAGATTTGCAT 18520 >seq70 Length=105670 Score = 122 bits (134), Expect = 9e-23 Identities = 576/899 (64%), Gaps = 27/899 (3%) Strand=Plus/Plus Query 153633 GCAATCGACGCCAAGTTGCAAACGGCAGTTTCGTCGGGGGCGCAATATTGTACTATTTCC 153692 ||||| || |||||||| || || || ||| || || | |||| || ||||| Sbjct 3865 GCAATGGAGGCCAAGTTACAGACAGCGACTTCATCAGGACTCGAGTATTCAACAATTTCT 3924 Query 153693 GCACACAAATTGCTGCATTTTATCAGGCCGCAATTACTTTGATTGCTTTTGCGGTTACAA 153752 | ||||| ||||||||| || ||| || | || ||||| || || | ||||||| Sbjct 3925 GTACACAGATTGCTGCACTTGATCGTACCCAAGTTTTGCTGATTACTCTTTCTGTTACAA 3984 Query 153753 GCGTCCTTGTATAGCATGTATGGTGTGCCGGTTTCGGCTTGAATTTCTATAATAGTACGC 153812 || ||||| || || ||| |||| |||| || || | |||| ||| | ||| | | | Sbjct 3985 GCATCCTTATAGAGTATGAATGGATTGCCTGTCTCCGTTTGAGCTTCCAAAATGGCATAC 4044 Query 153813 ATCAA--TGTGACCGCGGGCATTTGATCGCGAAACTGGCCCTTG--TC---TTCGTAGTG 153865 || | ||| | ||||||| || || ||| || |||||| | Sbjct 4045 CACAGCTTTTGAGCC-------TTGATCGTTTCTCTAGCTCTTCCTTCACGTTCGTATTT 4097 Query 153866 TTTGTACC-AGTATTCAAACTCATCACCAAACGTATTGT-TAAGCTCGGGACATTCGTTG 153923 || || || | ||||||| ||||| | | | | ||| | | ||| || ||| Sbjct 4098 TTCATAGAGAGCAA-CAAACTCGTCACCCCAGATTTCATGTAATC-CAGGAGCCTCATTG 4155 Query 153924 GGACACATCAGTGACCATCGGCCATTTTCTTGAACGCGACGCATAAATATATCGGGAACC 153983 ||||| | ||| ||||| ||| ||| || || |||| || | ||| |||| | Sbjct 4156 GGACAAAACAGAGACCAATCACCACCGTCTCTGACACGCTGCATGAAAAGATCAGGAATC 4215 Query 153984 CATAGGGCGTTCATCAGGTCGCGCGCTTTCGTGTCTTCGCTGCCAATGTTTCGACGCATG 154043 || || || | | ||| || || || | | || || |||||| |||| |||| | Sbjct 4216 CAGAGAGCATAGAACAGATCACGAGCCCTGATTTCGTCTTTGCCAAAGTTTTTTCGCAAG 4275 Query 154044 TGTAAGACGTCCATTATGTCGCAATGCCACGGTTCCACGTAAACTGCTTGAGCGCCTTTA 154103 | ||| | | | ||||| |||||| ||||||| ||| | ||| ||||| | Sbjct 4276 TCTAAAAAGGTAAAAATGTCTGCATGCCAAGGTTCCAAGTACATTGCGAATGCGCCCGGA 4335 Query 154104 CGCTTG---CCGCCCTGATTTACGTGACGCACCATATTGTTGAAAACCCGAAGCATGGGT 154160 ||||| || || |||| || | ||| || ||||||||||||| || |||||||| Sbjct 4336 CGCTTATTACCACCTTGATCGACATAACGAGCCGTATTGTTGAAAACACGTAGCATGGGC 4395 Query 154161 AGCAGACCGCTGGCGGTACCGTTTGTAGATTTAATCT-TGCTGTTGCGGCCTCGAACGCT 154219 | || ||| ||| | |||||| || ||| | || | | | |||| | | Sbjct 4396 AACAATCCGTTGGAGTAACCGTTGGTGCCGGCAATGTATGAT-CCACTAGCACGAATGTT 4454 Query 154220 GTTTACGTTTAATCCAATACCGCC-GCCGTGTTTGGAGATCATGGCGCAATCGTTCAATG 154278 || | |||||| ||||||||||| || || |||||||| || || || | | Sbjct 4455 GTGAATGTTTAAGCCAATACCGCCTGCTGT-CTTGGAGATTTGAGCACAGATTTTGAGCG 4513 Query 154279 TGTTATAGATACCACGAATGCTATCGCTTTCCATGGTCAATAGGAAACATGAACTCATCT 154338 | | ||||||||| || ||| || |||||| | | ||| || ||| ||||| Sbjct 4514 TCTCATAGATACCTTCGATCGAATCTTCTTTCATGGTGAGCAAGAAGCAAGAAGACATCT 4573 Query 154339 GCGGAGTTGGAGTGCCGGCAGCAAACATGGTCGGGCTTGCGTGCGTGTA-CATCTTTGTG 154397 | ||| || ||||| ||| ||| | || || || ||||| || | |||||| | Sbjct 4574 GGGGACGAGGTGTGCCTGCATTAAATAGAGTAGGACTAGCGTGTGTAAAGTATCTTT-CG 4632 Query 154398 CTCAAAAATTTATAAGACTTTATGGCATTATCAATGTCGTCTCCAAAGATACCTAGAGCT 154457 || || || || | || || || |||||| ||| |||| |||||| | || Sbjct 4633 GACATCAAGTTGTATGTCTCAATAGCTGCATCAATATCGGTTCCATGGATACCGATCGCA 4692 Query 154458 ATACGCATGTGCATGTGTTGAATCCTTTCGGCAACTTTTTCGTTAATTTTTATCAGGTA 154516 | ||||||| || || ||| | |||||||| || ||| ||| || | ||||| Sbjct 4693 ACACGCATGATCAAATGCTGAGGACGTTCGGCAATCTTGCCGTCAATCTTGAGAAGGTA 4751 >seq91 Length=92626 Score = 102 bits (112), Expect = 8e-17 Identities = 112/149 (75%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | ||| | ||| ||||||| ||||| || ||||||||||| ||||| ||| Sbjct 69962 CCACCACGAAGACGGAGAACCAAGTGAAGGGTAGATTCCTTTTGAATGTTGTAATCACTC 70021 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || | ||||||||| |||||||| || | || |||||||| ||||| ||||| Sbjct 70022 AAGGTACGACCGTCTTCGAGTTGTTTACCGGCGAAAATGAGACGTTGTTGATCAGGAGGG 70081 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTT 139686 || ||||| || || ||| ||||| || Sbjct 70082 ATACCTTCCTTATCTTGGATCTTTTGCTT 70110 >seq11 Length=236632 Score = 98.7 bits (108), Expect = 1e-15 Identities = 113/152 (74%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 139535 TGGCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCG 139594 || ||||| || | ||| | || ||||||| ||||| |||||||| ||||| ||||| Sbjct 185 TGACCGCCACGAAGACGAAGGACCAAGTGAAGAGTAGATTCTTTTTGGATGTTGTAATCA 126 Query 139595 CTCATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGA 139654 |||| || | ||||||||||| || || || | || |||||||| ||||| ||| Sbjct 125 CTCAAAGTACGACCATCTTCGAGCTGCTTGCCGGCGAAAATGAGACGTTGTTGATCAGGA 66 Query 139655 GGTATGCCTTCTTTGTCGGTGATTTTTTGTTT 139686 || || ||||| ||||| ||| ||||| || Sbjct 65 GGGATACCTTCCTTGTCTTGGATCTTTTGCTT 34 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496060527552000