Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizopus_20microsporus_20var._20microsporus_20[genbank_20GCA_5F00208 3745.1_202017-04-12] 560 sequences; 24,950,816 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq106 190 2e-43 >seq106 Length=79482 Score = 190 bits (210), Expect = 2e-43 Identities = 534/816 (65%), Gaps = 8/816 (1%) Strand=Plus/Plus Query 13390 TTTTCAAAAAAGTTAGTTTTACCTTCCAGTGATATATTTTCCATAAAATCGAATGGATTT 13449 |||||||| ||||| || || |||| || || || | |||||||| || |||||||| Sbjct 37122 TTTTCAAAGAAGTTGGTCTTGCCTTGGAGAGAGATCATGTCCATAAAGTCAAATGGATTA 37181 Query 13450 GTTGACATAAACACTTTATCACAACCTAGTTCTAATAATAATCTATCAGCAATAAACTCA 13509 || | ||| | | || || | || || | | | | | |||||||| || ||| Sbjct 37182 GTAGCCATGTAAATCTTGTCGAACCCAAGAGCAACCATGAGACGATCAGCAACGAATTCA 37241 Query 13510 ATATATTGAGACATTAAATCACAATTCATACCTATTAGTTTTACAGGAATTATATTAGTT 13569 || |||||| |||| || || ||||||| || || || || |||| || || Sbjct 37242 ATGTATTGACACATCAAGGCAGAATTCATGCCAATGAGAGCAACGGGAAGAGCATCCGTC 37301 Query 13570 AAAAATTCTTTTTCTATAGACACAGCCTCGTTTATAATAATCTTAATAATGTCATTAGAA 13629 |||||||||| ||| || ||||| || || ||| ||| | || | | Sbjct 37302 AAAAATTCTTGTTCAATGCTGACAGCTTCCAAGATGATATCCTTGACGCGTTCTTGGCTA 37361 Query 13630 GGAGGATATTTTAGATGTTTAAAAATTAAACACGCAAAATCACAATGAAGGCCCTCATCT 13689 ||| | | || || |||| | | ||| ||||| ||| |||||| || ||||| Sbjct 37362 GGACGCTTACGAAGGTGGGTAAATAAAAGACAAGCAAAGTCAGTATGAAGACCTTCATCA 37421 Query 13690 CTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGtttttttAACCAA 13749 | || || | ||| || ||||| || || |||||||| || ||||| || | |||| Sbjct 37422 CGACAGATCAATTCATTGCTGAATGTCAAACCGGGCATCAAACCACGTTTCTTGAGCCAA 37481 Query 13750 AATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAGT 13809 || || | ||| || || || || ||||| || || || || |||||||| || | || Sbjct 37482 AAGATGGAAGCAAAGGAACCAGAGAAGAAGATACCTTCGACAGCAGCAAAGGCAACAAGG 37541 Query 13810 CGTTCTCCAAACGATGCTTTTTTGTTTGATATCCATTTTCTAGCCCATTCAGAttttttt 13869 || || |||| || | ||| | || ||||| || ||||| |||| ||| | Sbjct 37542 CGCTCAGCAAAGGAACCGTTTGAG---GAAATCCACTTGAAGGCCCAATCAGCCTTTCTC 37598 Query 13870 ttAATAAAATCCATTGTTTCGATTGCATTGAATAAATGTTCCTTCTCTTTAGTACTTGAA 13929 || ||| || || || || || ||| || | ||| ||||||| || | Sbjct 37599 TTGATACAAGGGATAGTGTCAATAGCAGAAAAGAGCATTTCTTTCTCTTGGTTATCTTTG 37658 Query 13930 ATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCTATAGCTATCTGA 13989 || || || ||||| | | || || |||| | ||| |||||||| || || ||| Sbjct 37659 ATATAAGTGTCAATCAAAAGACTGTAAGTTTCTGCGTGAATGTTTTCAATCATGATTTGA 37718 Query 13990 AAACCATAAAAACATCTAGCTTCTG-ACCATTGTACCTCCGAGTAAAATCTTTCTGCCAA 14048 || ||||| |||||| ||||||| | | ||| || || |||| ||| |||| Sbjct 37719 AAGCCATAGAAACATTTAGCTTCAGGAATCTTG-ACTTCATCACAAAAGTTTTGAACCAA 37777 Query 14049 GTTTTCATTAACAATACCATCACTAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTA 14108 ||||||||||||||| ||||| | | ||||| || ||||| | |||||| | Sbjct 37778 GTTTTCATTAACAATGCCATCTGAACCAGCAAAGAAGGCCAAGACACGAGAGATAAAGAA 37837 Query 14109 TTGCTCTTCATTGTTGAGT---TTTTTCCAATCGGCTAAATCCTTAGAAAGATCTACTTC 14165 | || | | | | | | |||| |||||| | |||||| | ||| | ||| Sbjct 37838 ACGTTCATTTTCGGTCATTTTGTTTTCCCAATCATGAAGATCCTTGCTCAAATCGATTTC 37897 Query 14166 ATCAACTGTCCAAAAACTAGCGACAGCTTTTTTATA 14201 ||| |||||||||| ||| ||||||||||||| Sbjct 37898 TTCAGCTGTCCAAAAGGAAGCTTCAGCTTTTTTATA 37933 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478585449878400