Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizopus_20microsporus_20var._20microsporus_20[genbank_20GCA_5F00208 3745.1_202017-04-12] 560 sequences; 24,950,816 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq70 477 1e-129 seq106 251 1e-61 seq53 113 6e-20 >seq70 Length=105670 Score = 477 bits (528), Expect = 1e-129 Identities = 1055/1561 (68%), Gaps = 27/1561 (2%) Strand=Plus/Plus Query 71377 CCTGCATATGTATCGTATGGTCCTTCTTTTTCGGCTAGTTCACAACTCGCCTCTAATGCT 71436 ||| |||| || ||||| ||||| | ||||| || | || || || || | || Sbjct 3541 CCTTCATAGGTTTCGTAAGGTCCATACTTTTCAGCCAACTCGCAGGAGGCTTCCAGGGCA 3600 Query 71437 CCATAATAAATGGTTTCGAAAATCTTCTTATTGAGAT-CTTGTGCTTCCGGGCTATCAAA 71495 ||| || |||||||| || || | | || | | |||| ||||| || ||| || Sbjct 3601 GCATGGTAGATGGTTTCAAAGATTTGAATGTTCAACTGCTTG-GCTTCAGGTGAATCGAA 3659 Query 71496 TGGATAATTTAAGAGA-ATAAACGCGTCTGCTAATCCTTGAACGCCAATACCGATAGGTC 71554 ||||||| ||||| || || | ||| ||||| |||||||| || | ||| || |||| Sbjct 3660 TGGATAACG-AAGAGCCATGAAAGTGTCGGCTAAGCCTTGAACACCTAAACCAATCGGTC 3718 Query 71555 TGTGTCTCTTATTAGAAATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTT 71614 |||||||||| || || |||| ||||| | |||||| ||||| ||||| || || | Sbjct 3719 TGTGTCTCTTGTTGGATCTTTCGGCTTCGATGACAGGATAGTAATTGATATCGATGATCT 3778 Query 71615 TATTGAGATTTCTGACTATTACTTTGACCACATCCTTTAGTTTGAGAAAATCAAATCTCC 71674 | || | ||||| || || ||| ||||| | ||||| | |||||| | | Sbjct 3779 TGTTCAAGTTTCTAGTGATAACCTTGGTAACATCGTGCAGTTTTTGGAAATCATACTTTT 3838 Query 71675 CATCTATTA--CAAACACGTT--CAAGGCAACAGATGCCAGATTACAAACGGCTACCTCA 71730 | |||||| || | | || || |||| || |||| ||||| || || || ||| Sbjct 3839 C-TCTATTGATCACATAGGTAGGCAGAGCAATGGAGGCCAAGTTACAGACAGCGACTTCA 3897 Query 71731 TTAGCATCGGCATATTGTATAATTTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAA 71790 | || | | |||| | |||||| || || ||||| || |||||||| || || || Sbjct 3898 TCAGGACTCGAGTATTCAACAATTTCTGTACACAGATTGCTGCACTTGATCGTACCCAAG 3957 Query 71791 TTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATAAACGGAGTACCAGTT 71850 ||||| |||||||||||| ||||||| ||||||||||| || || || ||| | || || Sbjct 3958 TTTTGCTGATTACTCTTTCTGTTACAAGCATCCTTATAGAGTATGAATGGATTGCCTGTC 4017 Query 71851 TCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATATTCTTGTAT 71910 || | |||| ||| | ||| || | ||| | | ||||||| || | ||| | || Sbjct 4018 TCCGTTTGAGCTTCCAAAATGGCATACCACAGCTTTTGAGCCTTGATCGT-TTC-TCTAG 4075 Query 71911 CTCTT--TTCTCTTTCGTATTGTGTATATAATCGTTCGAACTCGTCTCCCCAAGCATTGT 71968 ||||| ||| | |||||||| | ||| | | |||||||| ||||| | | Sbjct 4076 CTCTTCCTTCACGTTCGTATTTTTCATAGAGAGCAACAAACTCGTCACCCCAGATTTCAT 4135 Query 71969 CTAATCCAGGACATTCATTCGGACACATCAATGACCACTCTCCATCATCATTTACTCGTT 72028 |||||||||| ||||| ||||| | || ||||| || ||| | || | || || | Sbjct 4136 GTAATCCAGGAGCCTCATTGGGACAAAACAGAGACCAATCACCACCGTCTCTGACACGCT 4195 Query 72029 TCATAAAGAGATCAGGAATCCAAAGAGCTATA-AATAGATCTCTGGTTCTATGCTCCTCG 72087 ||| || |||||||||||||| ||||| ||| || ||||| | | || || || Sbjct 4196 GCATGAAAAGATCAGGAATCCAGAGAGC-ATAGAACAGATCACGAGCCCTGATTTCGTCT 4254 Query 72088 TTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAG 72147 || || || ||| | || | || | | ||| || | |||||| ||||||||| Sbjct 4255 TTGCCAAAGTTTTTTCGCAAGTCTAAAAAGGTAAAAATGTCTGCATGCCAAGGTTCCAAG 4314 Query 72148 TATATGGCCATAACTCCCGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTA 72207 || || || | | ||||| || || || || || ||||| | || | ||| || || Sbjct 4315 TACATTGCGAATGCGCCCGGACGCTTATTACCACCTTGATCGACATAACGAGCCGTATTG 4374 Query 72208 TTATAAACTCTCAACATTGG-AATAATACCATTGGATGCACCATTGGTCCCGGAGATATA 72266 || |||| | | ||| || || ||| || ||||| ||| ||||| |||| || || Sbjct 4375 TTGAAAACACGTAGCATGGGCAACAAT-CCGTTGGAGTAACCGTTGGTGCCGGCAATGTA 4433 Query 72267 GCTTCCACTGGCACGAATATTGCTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGAT 72326 |||||| |||||||| ||| ||| || || || || ||||| | || ||||| Sbjct 4434 TGATCCACTAGCACGAATGTTGTGAATGTTTAAGCCAATACCGCCTGCTGTCTTGGAGAT 4493 Query 72327 TAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAG 72386 | || || ||| | ||| |||||||| || || || ||| || ||||| | || Sbjct 4494 TTGAGCACAGATTTTGAGCGTCTCATAGATACCTTCGATCGAATCTTCTTTCATGGTGAG 4553 Query 72387 TAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGC 72446 | || || |||||| ||| ||||| || || |||||||||| |||||| ||| Sbjct 4554 CAAGAAGCAAGAAGACATCTGGGGACGAGGTGTGCCTGCATTAAATAGAGTAGGACTAGC 4613 Query 72447 GTGCGTAAACCATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATCCCA 72506 ||| ||||| || |||| |||| | ||||| ||||||||||||| || ||||| Sbjct 4614 GTGTGTAAAGTATCTTTCGGACATCAAGTTGTATGTCTCAATAGCTGCATCAATATCGGT 4673 Query 72507 TTGATGTATTCCTACCGCGACACGCATTAACATATGCTGAGGTCTTTCAACGATCTTGTT 72566 | ||| || || | ||| |||||||| | || ||||||||| | ||| | |||||| Sbjct 4674 TCCATGGATACCGATCGCAACACGCATGATCAAATGCTGAGGACGTTCGGCAATCTTGCC 4733 Query 72567 ATTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA--TGAA 72624 | || || | | ||| || || | |||||| |||||||| ||||||| |||| Sbjct 4734 GTCAATCTTGAGAAGGTAAGAACGCTCGAGAGTTTTGAAACCAAAGAAGTTGTACTTGAA 4793 Query 72625 AAGTCTCGTTCGTAAATAATAACCGAATT---GAGTTTATCCTTATATTTGTTAACTATA 72681 | || || || || || || | || || | | | | | |||| || |||| | Sbjct 4794 A--TCACGGTCATAGATGATGGCAGAGTTCAAGCGGTCAGCGTTATCCATGACAACTTTG 4851 Query 72682 TCCATGGTGATACTTGAAATAATCGGAGAATGTTTCCCATTTTTAGGATTAACATAGTTG 72741 | | || | | || || || || || ||||| || | || ||||| ||||| ||| Sbjct 4852 TAC---GTTTCATTAGAGATCATGGGTGAGTGTTTGCCTGTCTTGGGATTCACATAATTG 4908 Query 72742 AATAAATCCTCCATCACTTCACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATACG 72801 | || || || || |||| | ||| | ||||| ||||||||||| ||||| || | | Sbjct 4909 TACAAGTCTTCAATTACTTGAGAAAAGACCTTTTTGGTTTCCTTGTGAAGATTAGAAATG 4968 Query 72802 GCTATTCTGGCGGCTAGAATGGCATAATCTGGATGTTGTGTAGTACAAGTGGCTGCTATT 72861 || || | || || | | |||||||| ||||| | || || | || ||| || Sbjct 4969 GCAATGCGCGCAGCCAACAGAGCATAATCAGGATGGCGAGTGGTCATATAAGCAGCTGTT 5028 Query 72862 TCTGCTGCCAGAGTGTCCAATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACC 72921 ||||| || || | || | ||| || ||||| || || | |||| || ||||||| Sbjct 5029 TCTGCAGCAAGGTTATCGAGTTCGACAGTTGTAACACCTTGGTATACACCAGAGATAACC 5088 Query 72922 T 72922 | Sbjct 5089 T 5089 >seq106 Length=79482 Score = 251 bits (278), Expect = 1e-61 Identities = 561/834 (67%), Gaps = 11/834 (1%) Strand=Plus/Plus Query 41789 ACACGTTTTTCGAAAAAATTAGTCTTTCCTTCCAATGATATATTTTCCATGAAATCAAAC 41848 ||||| ||||| || || || ||||| |||| | || || | ||||| || ||||| Sbjct 37116 ACACGCTTTTCAAAGAAGTTGGTCTTGCCTTGGAGAGAGATCATGTCCATAAAGTCAAAT 37175 Query 41849 GGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAATCAATCTATCTGCGATG 41908 ||||| ||| | | ||||| || | || || | || || | | ||| || | | Sbjct 37176 GGATTAGTAGCCATGTAAATCTTGTCGAACCCAAGAGCAACCATGAGACGATCAGCAACG 37235 Query 41909 AATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGTTTAACTGGAAGAGCC 41968 ||||| || ||| ||||| || ||||||| || || || ||| |||||||| Sbjct 37236 AATTCAATGTATTGACACATCAAGGCAGAATTCATGCCAATGAGAGCAACGGGAAGAGCA 37295 Query 41969 ACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAATAGATCTTACTGTTTCT 42028 | || | ||||||||||||||| ||| || || || ||| | || |||| Sbjct 37296 TCCGTCAAAAATTCTTGTTCAATGCTGACAGCTTCCAAGATGATATCCTTGACGCGTTCT 37355 Query 42029 TCACTCGGTGGAT-ACAATAAATGTTTAAACATCAAACATGCGAAATCGCAGTGCAGACC 42087 | || || | | || | | || |||| | | ||| || || || || ||||| Sbjct 37356 TGGCTAGGACGCTTACGA-AGGTGGGTAAATAAAAGACAAGCAAAGTCAGTATGAAGACC 37414 Query 42088 CTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTT 42147 ||||| | || || ||||| ||| || || | |||||||| | ||||| || || Sbjct 37415 TTCATCACGACAGATCAATTCATTGCTGAATGTCAAACCGGGCATCAAACCACGTTTCTT 37474 Query 42148 AAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGGC 42207 |||||||| || || ||||| || ||||| |||||||| ||||| || || |||||||| Sbjct 37475 GAGCCAAAAGATGGAAGCAAAGGAACCAGAGAAGAAGATACCTTCGACAGCAGCAAAGGC 37534 Query 42208 AATAAGTCTCTCTCCATAACCGGCACTGTC--ATGTA-TCCACTTTTGAGCCCAATCGGC 42264 || ||| | ||| || | || || || | | | ||||||| |||||||| || Sbjct 37535 AACAAGGCGCTCAGCAAA---GGAACCGTTTGAGGAAATCCACTTGAAGGCCCAATCAGC 37591 Query 42265 CTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGtttttttCATTACT 42324 ||| | || | |||||| || || || || ||| |||||| | ||| || | | Sbjct 37592 CTTTCTCTTGATACAAGGGATAGTGTCAATAGCAGAAAAGAGCATTTCTTTCTCTTGGTT 37651 Query 42325 ATCTTTAACATATGTATCGATCAAAAGACTATACATTTCTGAATGAATGTTTTCAATGGC 42384 |||||| | ||| || || ||||||||||| || |||||| |||||||||||||| Sbjct 37652 ATCTTTGATATAAGTGTCAATCAAAAGACTGTAAGTTTCTGCGTGAATGTTTTCAATCAT 37711 Query 42385 CATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACCTGTACTTCTGTACAAAATCGTTC 42444 || ||||| || ||||||||| | || || | || || ||||| |||||| || Sbjct 37712 GATTTGAAAGCCATAGAAACATTTAGCTTCAGGAATCTTGACTTCATCACAAAAGTTTTG 37771 Query 42445 AGCTAAATTTTCGTTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTAT 42504 | | || ||||| || || || || || | ||||| || ||||| ||| | || Sbjct 37772 AACCAAGTTTTCATTAACAATGCCATCTGAACCAGCAAAGAAGGCCAAGACACGAGAGAT 37831 Query 42505 AAAATATTTTTC--GTCCGGT-GTTAATTTATTCCAATCATTGATATCTTTAGATATATC 42561 ||| | ||| | |||| || || | |||||||| | ||| || | ||| Sbjct 37832 AAAGAAACGTTCATTTTCGGTCATTTTGTTTTCCCAATCATGAAGATCCTTGCTCAAATC 37891 Query 42562 TACTTCTTCTACCGTCCAAAATGATGCTTCTGCCTTTTTATACATATTCCAGAT 42615 | |||||| | |||||||| || ||||| || |||||||| | | |||||| Sbjct 37892 GATTTCTTCAGCTGTCCAAAAGGAAGCTTCAGCTTTTTTATAGAATTGCCAGAT 37945 >seq53 Length=125223 Score = 113 bits (124), Expect = 6e-20 Identities = 299/451 (66%), Gaps = 8/451 (2%) Strand=Plus/Minus Query 72198 AGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCC 72257 |||||||| |||| | |||| | ||||||||| || |||||||| | ||| || || || Sbjct 91532 AGCGGTGTCATTAAAGACTCGGAGCATTGGAATGATGCCATTGGAGGTACCGTTTGTTCC 91473 Query 72258 GGAGATATAGCTTCCACTGGCACGAATATTGCTAATTGATAGACCTATTCCCCCTGCCAT 72317 | |||||| ||| | ||||||| || | | | || | || || || Sbjct 91472 TGCGATATAAGAGCCAGAGCCACGAATCTTTTGAGCAGCAACGCCAACACCGCCAGCAGA 91413 Query 72318 TTTAGAGATTAATGCGCA--TCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCC 72375 || ||||| || || | || || |||||||||||||| || ||||| || || Sbjct 91412 CTTGGAGATACGAGCACAAGTGGTGATA--GTATCATAGATGCCTTCGATACTGTCCTCT 91355 Query 72376 ATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAG 72435 |||| | || || || || ||||| | ||| | | || || || || || || Sbjct 91354 TTCATTTGAACAAGGAAGCAACTAGATAATTGAGGTTTAGGTGTACCAGCGTTGAACAAT 91295 Query 72436 GTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGAT 72495 ||||| | ||| || ||||| |||| |||| |||| || || || | || | | Sbjct 91294 GTAGGTGTAGCATGAGTAAAGTATTTAGATGACATAAGATCATAGGT-TCTAAAGGCGCT 91236 Query 72496 TCTATATCCCATT--GATGTATTCCTACCGCGACACGCATTAACATATGCTGAGGTCTTT 72553 | | || |||| || || || | || |||||||| | ||||| ||||||| || Sbjct 91235 T-TCTAGGTCATTACCGTGAATGCCAATAGCAACACGCATAATCATATATTGAGGTCGTT 91177 Query 72554 CAACGATCTTGTTATTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAAT 72613 ||||||| | |||||| || || | ||||||| || || |||||||| ||||| Sbjct 91176 CAACGATTTCGTTATTGATCTTTAGCAAGTAGCTACGCTCTAACGTTTTAAAGCCAAAGA 91117 Query 72614 AGTTGTATGAAAAGTCTCGTTCGTAAATAAT 72644 |||| | ||| |||| |||| ||| || Sbjct 91116 AGTTAAAATCAAAATCTCTATCGTGAATGAT 91086 Score = 105 bits (116), Expect = 9e-18 Identities = 278/422 (66%), Gaps = 7/422 (2%) Strand=Plus/Minus Query 70839 ATAGTACATGCCTGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTT 70898 |||||||||||| || ||||| || |||| | ||||| |||||| || | ||| Sbjct 93110 ATAGTACATGCCAGTCTTTAGTCCCTTCTTCCAGGCATAAAAGTGCATAGAAGTCAATTT 93051 Query 70899 GGAATAGCTAGGATCGGCTATGTGAAT--ATTCATCGACTGACTTTGATCGATGAAGGCT 70956 | | || | || ||||| || ||| |||||| || ||| |||||| || |||||| Sbjct 93050 GCCAAAGTTTGGTTCGGC--AGTAAATAAATTCATAGATTGAGATTGATCAATAAAGGCT 92993 Query 70957 CCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAA 71016 || || || || ||||| | || || || |||||| ||| ||||| | || || || Sbjct 92992 CCTCTATCAGCGGCCATGTCAATAATAGTTCTTTGTGAAATCTCCCACACGGTCTTGTAT 92933 Query 71017 ACTCGCTTAATATCTTCTGGAAGGTTTG---TATTCTGAATGGATCCACCATCTGCAATA 71073 | | || | ||| || |||| | | || ||| || || |||| || || Sbjct 92932 AGTTTTTTGAGATCATCAGGAATGCCAGGAATACGCTGGATACTACCGCCATGAGCGATC 92873 Query 71074 ATCCTATTTTTGATCTCTTCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGA 71133 ||| | || ||||| | ||||||||||| | || | | | | | | | ||| Sbjct 92872 ATCATGTTCTTGATGTTATCATTCCATAAATCGAGTTCAATGAGATCATTCAATAAATGC 92813 Query 71134 GGATTAACTACTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATAC 71193 | || |||| ||| ||||| || || | ||| || |||||||| || || || Sbjct 92812 TGGTTGACTATTTGGAATTCACCGCTTTGAACACGACGCGTATAAATATTGCTAGTGTAA 92753 Query 71194 GGTTCCACTGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCC 71253 || || | | || ||||| ||||| |||||| ||| ||||| |||||||| || Sbjct 92752 GGCTCGAAGCATTCGTTATTACCCAATATTTGACTAGTGCTAGCAGTAGGCATAGGAGCA 92693 Query 71254 AC 71255 || Sbjct 92692 AC 92691 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671134502025600