Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizopus_20microsporus_20var._20microsporus_20[genbank_20GCA_5F00208 3745.1_202017-04-12] 560 sequences; 24,950,816 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq109 140 3e-28 seq165 116 4e-21 seq91 102 8e-17 seq11 89.7 5e-13 seq70 86.0 6e-12 >seq109 Length=78937 Score = 140 bits (154), Expect = 3e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || || || | ||| | || || |||| |||||||| ||||| ||||| || ||||| Sbjct 18294 CCACCACGGAGACGAAGGACCAAGTGAAGAGTAGATTCCTTTTGAATGTTATAGTCGCTT 18353 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | || | ||||||||||||||||||||| |||| |||||||| ||||| ||||| Sbjct 18354 AGGGTACGACCATCTTCGAGTTGTTTACCAGCAAAGATGAGACGTTGTTGATCAGGAGGA 18413 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || ||||| ||||| ||| |||||||||| | || | ||||| | | ||| ||| Sbjct 18414 ATACCTTCCTTGTCTTGAATCTTTTGTTTTACATTGTCGATAGTGTCAGAAGATTCGACT 18473 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || | ||| | ||||| || || | ||| || || || |||||||| Sbjct 18474 TCTAAAGTAATTGTCTTTCCAGTAAGTGTCTTGACAAAGATTTGCAT 18520 >seq165 Length=49949 Score = 116 bits (128), Expect = 4e-21 Identities = 115/149 (77%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || || || | ||| | |||||| || | |||||||| ||||| |||||||| |||||| Sbjct 37828 CCACCACGAAGACGGAGAACTAAGTGGAGAGTAGATTCCTTTTGGATGTTGTAGTCGCTC 37887 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | || | |||||||||||||||||| ||| |||| |||||||| || || ||||| Sbjct 37888 AAGGTACGACCGTCTTCGAGTTGTTTACCGGCAAAGATAAGACGTTGTTGGTCAGGAGGA 37947 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTT 143106 || ||||| ||||| ||| ||||| || Sbjct 37948 ATACCTTCCTTGTCTTGAATCTTTTGCTT 37976 >seq91 Length=92626 Score = 102 bits (112), Expect = 8e-17 Identities = 103/134 (77%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || || || | ||| | ||| || |||| |||||||| ||||| ||||||||||| ||| Sbjct 69962 CCACCACGAAGACGGAGAACCAAGTGAAGGGTAGATTCCTTTTGAATGTTGTAATCACTC 70021 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | || | |||||||||||||||||| || | || |||||||| ||||| ||||| Sbjct 70022 AAGGTACGACCGTCTTCGAGTTGTTTACCGGCGAAAATGAGACGTTGTTGATCAGGAGGG 70081 Query 143078 ATGCCTTCTTTGTC 143091 || ||||| || || Sbjct 70082 ATACCTTCCTTATC 70095 >seq11 Length=236632 Score = 89.7 bits (98), Expect = 5e-13 Identities = 102/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 142955 TGGCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCG 143014 || || || || | ||| | || || |||| |||||||||||||| ||||||||||| Sbjct 185 TGACCGCCACGAAGACGAAGGACCAAGTGAAGAGTAGATTCTTTTTGGATGTTGTAATCA 126 Query 143015 CTCATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGA 143074 |||| || | |||||||| || || || || | || |||||||| ||||| ||| Sbjct 125 CTCAAAGTACGACCATCTTCGAGCTGCTTGCCGGCGAAAATGAGACGTTGTTGATCAGGA 66 Query 143075 GGTATGCCTTCTTTGTC 143091 || || ||||| ||||| Sbjct 65 GGGATACCTTCCTTGTC 49 >seq70 Length=105670 Score = 86.0 bits (94), Expect = 6e-12 Identities = 159/233 (68%), Gaps = 3/233 (1%) Strand=Plus/Plus Query 157379 ACGCGTTTCATAAATATATCGGGAACCCATAAAGCGTTCATCAAATCACGCGCTTTGGTG 157438 || || | ||| || | ||| |||| ||| | ||| | | || |||||| || || | Sbjct 4189 ACACGCTGCATGAAAAGATCAGGAATCCAGAGAGCATAGAACAGATCACGAGCCCTGATT 4248 Query 157439 TCTTCGCTGCCAATGTTTCGACGCATGTGTAAAACGTCCATAATGTCGCAATGCCACGGT 157498 || || |||||| |||| |||| || ||||| | | |||||| |||||| ||| Sbjct 4249 TCGTCTTTGCCAAAGTTTTTTCGCAAGTCTAAAAAGGTAAAAATGTCTGCATGCCAAGGT 4308 Query 157499 TCAACGTACACTGCTTGGGCTCCTTTTCGCTTG---CCACCTTGATCCACGTGACGCACC 157555 || | ||||| ||| || || ||||| ||||||||||| || | ||| || Sbjct 4309 TCCAAGTACATTGCGAATGCGCCCGGACGCTTATTACCACCTTGATCGACATAACGAGCC 4368 Query 157556 ATATTATTAAAAACTCGCAGCATTGGTAGCAGTCCGCTGGCGGTGCCGTTCGT 157608 |||| || ||||| || ||||| || | || |||| ||| | ||||| || Sbjct 4369 GTATTGTTGAAAACACGTAGCATGGGCAACAATCCGTTGGAGTAACCGTTGGT 4421 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 507010850899200