Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizopus_20microsporus_20var._20microsporus_20[genbank_20GCA_5F00208 3745.1_202017-04-12] 560 sequences; 24,950,816 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq106 168 1e-36 seq59 122 1e-22 seq70 118 2e-21 seq53 95.1 2e-14 >seq106 Length=79482 Score = 168 bits (186), Expect = 1e-36 Identities = 552/847 (65%), Gaps = 32/847 (4%) Strand=Plus/Minus Query 125019 ATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTG 125078 || ||| || | || ||||| ||| | || ||||||||||| | ||||| ||||| || Sbjct 37945 ATCTGGCAATTCTATAAAAAAGCTGAAGCTTCCTTTTGGACAGCTGAAGAAATCGATTTG 37886 Query 125079 TCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAAACTGAGCGAGAGTTTATATCG 125138 |||||| || | |||||||| | |||| |||| ||| || ||||| || Sbjct 37885 AGCAAGGATCTTCATGATTGGGAAAACAAAATGACCGAAAATGAACGTTTCTTTATCTCT 37826 Query 125139 CACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCTGTTGACACGA 125198 | | |||||||||||||| || || ||||| || || || || || || | | Sbjct 37825 CGTGTCTTGGCCTTCTTTGCTGGTTCAGATGGCATTGTTAATGAAAACTTGGTTCAAAAC 37766 Query 125199 TTCTCTCAAGAGTTGACCATTCCAGAGGTGTCGTGCTTTTACGGATTCCAAATCATGATT 125258 || | | | || | | ||||| || | || || || || || |||||||||||| Sbjct 37765 TTTTGTGATGAAGTCAAGATTCCTGAAGCTAAATGTTTCTATGGCTTTCAAATCATGATT 37706 Query 125259 GAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACATTCGCGATCCGCAA 125318 || ||| | ||| | |||| ||| | ||||||||| || || ||| ||| Sbjct 37705 GAAAACATTCACGCAGAAACTTACAGTCTTTTGATTGACACTTATATCAAAGATAACCAA 37646 Query 125319 CGTAAACACATGCTCTTTAACGCAATCGACACGGTGCCGTCTATACGTAAAAAGGCTCAA 125378 ||| | ||||||||| || || ||||| | || | ||| | ||||||| | Sbjct 37645 GAGAAAGAAATGCTCTTTTCTGCTATTGACACTATCCCTTGTATCAAGAGAAAGGCTGAT 37586 Query 125379 TGGGTGATTCGGTGGATCGATGACGACAAGTCTTCGTACGCCGACAGACTGGTGGCATTC 125438 |||| | |||||| | | || ||| | || || | || || || || Sbjct 37585 TGGGCCTTCAAGTGGAT---TTCCTCAAACGGTTCCTTTGCTGAGCGCCTTGTTGCCTTT 37529 Query 125439 GCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTTGGCTCAAGAAG 125498 || || || || || |||||||| || ||| ||||| ||||||||||||||||||| Sbjct 37528 GCTGCTGTCGAAGGTATCTTCTTCTCTGGTTCCTTTGCTTCCATCTTTTGGCTCAAGAAA 37469 Query 125499 CGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGACGAGGGCCTA 125558 || || | |||||||| |||| ||| || || || || | ||| || || || || Sbjct 37468 CGTGGTTTGATGCCCGGTTTGACATTCAGCAATGAATTGATCTGTCGTGATGAAGGTCTT 37409 Query 125559 CACTGTGACTTTGCCATTCTACTGTTT-CGCAACT--ATCTGCGTCCCGAGTGCAGATCC 125615 || ||||||||| ||| | ||| | || || | |||| || || ||| | Sbjct 37408 CATACTGACTTTGCTTGTCTTTTATTTACCCACCTTCGTAAGCGT-CCTAGCCAAGAAC- 37351 Query 125616 AGCGATGAAAAGGTCATCAACATTGTAACCGATGCCGTGAGGATAGAACAAGAGTTTCTA 125675 || | |||| |||| | ||| || || || || || |||||||| ||| | Sbjct 37350 -GC---GTCAAGGATATCATC-TTG-----GAAGCTGTCAGCATTGAACAAGAATTTTTG 37301 Query 125676 ACCGAATCCCTACCGGTCAGCATGATTGGCATGAA--CTGCAAGCTAATGTGCGAGTACA 125733 || || | || || || | ||||||||||| |||| | ||||| | |||| Sbjct 37300 ACGGATGCTCTTCCCGTTGCTCTCATTGGCATGAATTCTGC--CTTGATGTGTCAATACA 37243 Query 125734 TAGAGTTTGTGGCAGATCGTCTACTGTACGAGTTG--ATTGG---CCGCAAGATTTACAA 125788 | || || || || |||||||| || |||| |||| | ||||||||||| Sbjct 37242 TTGAATTCGTTGCTGATCGTCTCATG-----GTTGCTCTTGGGTTCGACAAGATTTACAT 37188 Query 125789 CGCCAAGAATCCCTTTGATTTCATGACCAGCATATCACTAGAGGGTAAGACCAACTTTTT 125848 || | ||||| ||||| || ||| || || || || | || ||||||||||| || Sbjct 37187 GGCTACTAATCCATTTGACTTTATGGACATGATCTCTCTCCAAGGCAAGACCAACTTCTT 37128 Query 125849 CGAGAAG 125855 || ||| Sbjct 37127 TGAAAAG 37121 >seq59 Length=120760 Score = 122 bits (134), Expect = 1e-22 Identities = 166/227 (73%), Gaps = 6/227 (3%) Strand=Plus/Minus Query 70064 GAGGGCGATCTGGGGCCAGTGTACGGATTCCAGTGGAGGCACTCGGGCACCAAGTATGTA 70123 || || || || || ||||| |||||||| || ||||| |||| ||| ||||||| || Sbjct 8980 GAAGGTGACCTTGGACCAGTTTACGGATTTCAATGGAGACACTTTGGCGCCAAGTACGTT 8921 Query 70124 GACTGCGAGACAGACTATTCGGGTCAGGGTGTTGATCAATTGCAGACAA-TCATTGACAC 70182 ||||| || || || ||| | || || || ||||||||||| || |||| | ||||| || Sbjct 8920 GACTGTGACACTGATTATACAGGACAAGGCGTTGATCAATTACA-ACAAGTGATTGATAC 8862 Query 70183 TCTCAAGACCAATCCAACAGATAGGAGGATCGTAATGTGCTCATGGAATCCTGCAGATTT 70242 | | || | |||||| || ||| | || ||| | | | ||||||| ||||||||| | Sbjct 8861 TATAAAAAACAATCCCACTGATCGCAGAATCATTCTATCAGCATGGAACCCTGCAGATAT 8802 Query 70243 GCACCAAATGGCACTACCACCGTGTCA--CTGTTTGGCTCAGTTTTA 70287 | ||||| ||||||| ||||| | |||| ||||||||| Sbjct 8801 TCCTATCATGGCTTTACCACCTTGTCATGCCTTTTG--TCAGTTTTA 8757 >seq70 Length=105670 Score = 118 bits (130), Expect = 2e-21 Identities = 296/446 (66%), Gaps = 4/446 (1%) Strand=Plus/Minus Query 96876 CAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTGGCACGCGGAC 96935 || || || ||||| || || ||||| | || | ||||||||||||||||| || ||| Sbjct 4352 CAAGGTGGTAATAAGCGTCCGGGCGCATTCGCAATGTACTTGGAACCTTGGCATGCAGAC 4293 Query 96936 GTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCACGAGCCAGGGAC 96995 ||||| |||| | || |||| ||||||| |||| || || | || | || Sbjct 4292 ATTTTTACCTTTTTAGACTTGCGAAAAAACTTTGGCAAAGACGAAATCAGGGCTCGTGAT 4233 Query 96996 TTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTCAACGACGGTGGCTAC 97055 |||| ||||| |||||| | || ||| | |||||| |||| |||| |||||||| | Sbjct 4232 CTGTTCTATGCTCTCTGGATTCCTGATCTTTTCATGCAGCGTGTCAGAGACGGTGGTGAT 4173 Query 97056 TGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTGGGGCGAAGAGTTT 97115 ||| || | || ||| | | | || || | || |||||| || |||||| Sbjct 4172 TGGTCTCTGTTTTGTCCCAATGAGGCTCCTGGATTACATGAAATCTGGGGTGACGAGTTT 4113 Query 97116 GAGGCCAAGTACACGGCCTACGAGCAAGAGGGCCGA--TACGTGAGACGAGTCGATGCAC 97173 | || || ||||| | || || || || | || |||| || | || | Sbjct 4112 GTTGCTCTCTATGAAAAATACGAACGTGAAGGAAGAGCTA-GAGAAACGA-TCAAGGCTC 4055 Query 97174 GAGAACTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAACTCCGTACATTCTCT 97233 | | |||||| | ||||| || ||||| ||||| || | ||| | ||| |||| Sbjct 4054 AAAAGCTGTGGTATGCCATTTTGGAAGCTCAAACGGAGACAGGCAATCCATTCATACTCT 3995 Query 97234 ACAAGGATACCGTGAATCGCAACAGCAACCAACGCCACTTGGGCACCATCAAGGGCTCCA 97293 | |||||| | || | || || || || | ||||||| || |||||| || || Sbjct 3994 ATAAGGATGCTTGTAACAGAAAGAGTAATCAGCAAAACTTGGGTACGATCAAGTGCAGCA 3935 Query 97294 ATCTGTGCACGGAAATTGTAGAGTAC 97319 ||||||| || |||||||| || ||| Sbjct 3934 ATCTGTGTACAGAAATTGTTGAATAC 3909 >seq53 Length=125223 Score = 95.1 bits (104), Expect = 2e-14 Identities = 133/184 (72%), Gaps = 2/184 (1%) Strand=Plus/Plus Query 98040 TACAAGACTGTCTGGGAGATTCCGACCAAGA-CGCTGATCGATATGGCTGCCGACAGAGG 98098 |||||||| || ||||||||| | || |||| | | || || ||||| || || ||||| Sbjct 92934 TACAAGACCGTGTGGGAGATTTC-ACAAAGAACTATTATTGACATGGCCGCTGATAGAGG 92992 Query 98099 TGTCTACATTGACCAGAGTCAATCGTTCAATCTGTACGTTGCCGAGCCCACCTACAGTCG 98158 | || ||||| || |||||| | ||| | | |||||| || | || | Sbjct 92993 AGCCTTTATTGATCAATCTCAATCTATGAATTTATTTACTGCCGAACCAAACTTTGGCAA 93052 Query 98159 TATGACTTCGATACACTTTTACGCATGGAACAAGGGCCTCAAGACGGGCATGTACTATCT 98218 ||||||| || |||||||| || ||||| ||||| || ||||| |||||||||||| | Sbjct 93053 ATTGACTTCTATGCACTTTTATGCCTGGAAGAAGGGACTAAAGACTGGCATGTACTATTT 93112 Query 98219 GAGA 98222 |||| Sbjct 93113 GAGA 93116 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741054012585600