Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizopus_20microsporus_20var._20microsporus_20[genbank_20GCA_5F00208 3745.1_202017-04-12] 560 sequences; 24,950,816 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq106 176 1e-38 seq109 161 2e-34 seq91 98.7 2e-15 seq11 87.8 4e-12 >seq106 Length=79482 Score = 176 bits (194), Expect = 1e-38 Identities = 367/541 (68%), Gaps = 7/541 (1%) Strand=Plus/Minus Query 268760 GCTTCTTTTTGGACTGTAGAAGAAGTAGATCTGTCTTATGA-CTTAATAGATTGGAAAAA 268818 ||||| |||||||| | |||||| | ||| || | || ||| || |||||| |||| Sbjct 37918 GCTTCCTTTTGGACAGCTGAAGAAATCGATTTGAGCAAGGATCTTCAT-GATTGGGAAAA 37860 Query 268819 TTTAAAACCAGAA---GAAAGAAGATTTATATCTTATATTCTTGCGTTTTTTGCAGTTAG 268875 || | ||| ||| | ||||| ||| | | | || || ||||| | | Sbjct 37859 CAAAATGACCGAAAATGAACGTTTCTTTATCTCTCGTGTCTTGGCCTTCTTTGCTGGTTC 37800 Query 268876 TGATGGTATCGTTAACGAAAATCTAGTAGAGAAGTTCTGTCAAGAGGTACAGATTCCTGA 268935 ||||| || ||||| ||||| | || | || || ||| | || || |||||||||| Sbjct 37799 AGATGGCATTGTTAATGAAAACTTGGTTCAAAACTTTTGTGATGAAGTCAAGATTCCTGA 37740 Query 268936 AGCCAGATGTTTTTACGGATTCCAGATAGCTATAGAAAATATTCATTCAGAGATGTACAG 268995 ||| | |||||| || || || || || || ||||| ||||| |||| | ||||| Sbjct 37739 AGCTAAATGTTTCTATGGCTTTCAAATCATGATTGAAAACATTCACGCAGAAACTTACAG 37680 Query 268996 TCTATTAATAGATACTTATATAGATGATAACAACGA-AAAGAAAAGACTATTTTCTTCTA 269054 ||| || || || |||||||| | |||||| | || ||||||| | || |||||| ||| Sbjct 37679 TCTTTTGATTGACACTTATATCAAAGATAACCAAGAGAAAGAAATG-CTCTTTTCTGCTA 37621 Query 269055 TGAGAACTATGGACTGTGTGAGaaaaaaaTCTGAATGGGCTCTGAAATGGATAAACGATA 269114 | ||||| ||| | | | ||| |||| ||||| | || ||||| | | Sbjct 37620 TTGACACTATCCCTTGTATCAAGAGAAAGGCTGATTGGGCCTTCAAGTGGATTTCCTCAA 37561 Query 269115 GCGCGCCTTACGGAGAAAGGTTAGTTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGG 269174 || | | | || | | ||||| ||||| ||||| |||||||| ||||| || | Sbjct 37560 ACGGTTCCTTTGCTGAGCGCCTTGTTGCCTTTGCTGCTGTCGAAGGTATCTTCTTCTCTG 37501 Query 269175 GGTCTTTTGCCGCTATCTTTTGGTTGAAGAAAAGAGGCCTTATGCCAGGATTAACTTTCT 269234 | || ||||| | ||||||||| | |||||| | || | ||||| || || || ||| Sbjct 37500 GTTCCTTTGCTTCCATCTTTTGGCTCAAGAAACGTGGTTTGATGCCCGGTTTGACATTCA 37441 Query 269235 CTAACGAATTGATAAGCAGGGACGAAGGTTTACACTGCGACTTCGCTTGTTTATTATTTA 269294 || |||||||| | | || |||||| | || ||||| |||||| | ||||||| Sbjct 37440 GCAATGAATTGATCTGTCGTGATGAAGGTCTTCATACTGACTTTGCTTGTCTTTTATTTA 37381 Query 269295 C 269295 | Sbjct 37380 C 37380 >seq109 Length=78937 Score = 161 bits (178), Expect = 2e-34 Identities = 154/197 (78%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 |||||||| || ||||| |||||||| ||| || | ||| ||||| |||||||| ||| Sbjct 18324 GTAGATTCCTTTTGAATGTTATAGTCGCTTAGGGTACGACCATCTTCGAGTTGTTTACCA 18383 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 ||||| || || | |||||||||||||| || ||||| || || ||||||||| |||| Sbjct 18384 GCAAAGATGAGACGTTGTTGATCAGGAGGAATACCTTCCTTGTCTTGAATCTTTTGTTTT 18443 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 ||||| || | || || || ||| || |||| ||||| ||||| ||||||||||| Sbjct 18444 ACATTGTCGATAGTGTCAGAAGATTCGACTTCTAAAGTAATTGTCTTTCCAGTAAGTGTC 18503 Query 104543 TTTACAAATATCTGCAT 104559 || ||||| || ||||| Sbjct 18504 TTGACAAAGATTTGCAT 18520 >seq91 Length=92626 Score = 98.7 bits (108), Expect = 2e-15 Identities = 104/137 (76%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 |||||||| || ||||| || || ||| | || | ||||||||| |||||||| || Sbjct 69992 GTAGATTCCTTTTGAATGTTGTAATCACTCAAGGTACGACCGTCTTCGAGTTGTTTACCG 70051 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 || ||||| || | |||||||||||||| || ||||| ||||| || |||||| || Sbjct 70052 GCGAAAATGAGACGTTGTTGATCAGGAGGGATACCTTCCTTATCTTGGATCTTTTGCTTG 70111 Query 104483 ACATTTTCTACGGTATC 104499 ||||| || | ||| || Sbjct 70112 ACATTGTCAATGGTGTC 70128 >seq11 Length=236632 Score = 87.8 bits (96), Expect = 4e-12 Identities = 96/128 (75%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 ||||||||||| || || || || ||| | ||| | ||| ||||| || || || || Sbjct 152 GTAGATTCTTTTTGGATGTTGTAATCACTCAAAGTACGACCATCTTCGAGCTGCTTGCCG 93 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 || ||||| || | |||||||||||||| || ||||| || || || |||||| || Sbjct 92 GCGAAAATGAGACGTTGTTGATCAGGAGGGATACCTTCCTTGTCTTGGATCTTTTGCTTG 33 Query 104483 ACATTTTC 104490 |||||||| Sbjct 32 ACATTTTC 25 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151390138716480