Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizopus_20microsporus_20var._20microsporus_20[genbank_20GCA_5F00208 3745.1_202017-04-12] 560 sequences; 24,950,816 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq97 215 8e-52 seq258 197 2e-46 seq304 188 1e-43 >seq97 Length=86107 Score = 215 bits (238), Expect = 8e-52 Identities = 210/268 (78%), Gaps = 2/268 (1%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || ||||||||||| | ||| |||||| |||||||| ||||| || |||||||| ||||| Sbjct 21490 GCCAAGCGTCATCGTAAGAT-TCTTCGTGATAACATTCAAGGTATTACCAAGCCTGCTAT 21432 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 |||||||| || ||||||||||| ||||||||| ||||||| | |||||||||| | Sbjct 21431 TCGTCGTCTTGCCCGTCGTGGTGGTGTCAAGCGTATCTCTGGTCTCATCTATGAAGAAAC 21372 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 |||| |||| ||||||| |||||| | | |||||| | ||||||| | ||||| || Sbjct 21371 TCGTAATGTCTTGAAGACTTTCCTCGAAAACGTTATTCGTGATGCTGTTACTTATACTGA 21312 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 || || || | |||||||||||||| ||||| | |||||||| | || | ||||| Sbjct 21311 ACATGCCAAGAGAAAGACTGTCACCTCTTTGGATGTTGTCTATGCTCTCAAGAGACAAGG 21252 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAA 16699 ||||| | |||||||| || ||||| Sbjct 21251 CCGTACCCTCTATGGTTTCGGTGGTTAA 21224 >seq258 Length=22759 Score = 197 bits (218), Expect = 2e-46 Identities = 202/261 (77%), Gaps = 2/261 (1%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || ||||||||||| | ||| |||||| |||||||| ||||| || |||||||| ||||| Sbjct 2044 GCCAAGCGTCATCGTAAGAT-TCTTCGTGATAACATTCAAGGTATTACCAAGCCTGCTAT 1986 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 |||||||| || ||||||||||| ||||||||| ||||||| | |||||||||| | Sbjct 1985 TCGTCGTCTTGCCCGTCGTGGTGGTGTCAAGCGTATCTCTGGTCTCATCTATGAAGAAAC 1926 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 |||| |||| |||||| ||||||| | | |||||| | ||||||| | || || || Sbjct 1925 TCGTAATGTCTTGAAGTCCTTCCTCGAAAACGTTATTCGTGATGCTGTTACTTACACTGA 1866 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 || || || | |||||||| ||||| ||||| | |||||||| | || | ||||| Sbjct 1865 ACATGCCAAGAGAAAGACTGTTACCTCTTTGGATGTTGTCTATGCTCTCAAGAGACAAGG 1806 Query 16672 CCGTAAGATTTATGGTTTTGG 16692 ||| | | |||||||| || Sbjct 1805 CCGCACCCTCTATGGTTTCGG 1785 >seq304 Length=15134 Score = 188 bits (208), Expect = 1e-43 Identities = 200/261 (77%), Gaps = 2/261 (1%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGC-AGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||||||||||||||| |||| |||||| || ||||| ||||| || |||||||| ||||| Sbjct 8433 GCTAAGCGTCATCGCAAGAT-TCTTCGTGACAACATTCAAGGTATTACCAAGCCTGCTAT 8491 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 |||||||| || ||||||||||| ||||||||| ||||||| | |||||||||| | Sbjct 8492 TCGTCGTCTTGCCCGTCGTGGTGGTGTCAAGCGTATCTCTGGTCTCATCTATGAAGAAAC 8551 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 ||| | || ||||||| ||||| | | ||||| | ||||||| | ||||| || Sbjct 8552 CCGTAACGTCTTGAAGACTTTCCTTGAAAATGTTATTCGTGATGCTGTTACTTATACTGA 8611 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 || || || | |||||||| || ||| ||||| |||||||||| | || | ||||| Sbjct 8612 ACATGCCAAGAGAAAGACTGTTACTTCCTTGGATGTCGTCTATGCTCTCAAGAGACAAGG 8671 Query 16672 CCGTAAGATTTATGGTTTTGG 16692 |||| | || ||||| || Sbjct 8672 TCGTACTCTCTACGGTTTCGG 8692 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79074687988080