Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizopus_20microsporus_20var._20microsporus_20[genbank_20GCA_5F00208 3745.1_202017-04-12] 560 sequences; 24,950,816 total letters Query= NC_007151.1 Length=149622 Score E Sequences producing significant alignments: (Bits) Value seq109 158 1e-33 seq165 116 4e-21 seq11 114 1e-20 seq91 113 4e-20 seq106 100 3e-16 >seq109 Length=78937 Score = 158 bits (174), Expect = 1e-33 Identities = 162/212 (76%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 |||||| | ||||| || ||| | |||||||| | || || | ||| | ||||| Sbjct 18520 ATGCAAATCTTTGTCAAGACACTTACTGGAAAGACAATTACTTTAGAAGTCGAATCTTCT 18461 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 ||||| ||||| | || |||||||||||| ||||| ||||| || ||||| |||||| Sbjct 18460 GACACTATCGACAATGTAAAACAAAAGATTCAAGACAAGGAAGGTATTCCTCCTGATCAA 18401 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 ||| | ||||| | | || |||||||||||||||| | | | | | |||||||||||| Sbjct 18400 CAACGTCTCATCTTTGCTGGTAAACAACTCGAAGATGGTCGTACCCTAAGCGACTATAAC 18341 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 |||||||| ||||||||| | || ||||||| Sbjct 18340 ATTCAAAAGGAATCTACTCTTCACTTGGTCCT 18309 >seq165 Length=49949 Score = 116 bits (128), Expect = 4e-21 Identities = 112/144 (78%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 26828 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCA 26887 ||||||||| || | ||||| ||||||||| ||||| ||||| || ||||| || || Sbjct 37995 CGACACCATTGACAACGTCAAGCAAAAGATTCAAGACAAGGAAGGTATTCCTCCTGACCA 37936 Query 26888 ACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAA 26947 |||| | || || | | ||| |||||||||||||| | | | | | | |||||||| || Sbjct 37935 ACAACGTCTTATCTTTGCCGGTAAACAACTCGAAGACGGTCGTACCTTGAGCGACTACAA 37876 Query 26948 CATTCAAAAAGAATCTACTATCCA 26971 ||| ||||| ||||||||| |||| Sbjct 37875 CATCCAAAAGGAATCTACTCTCCA 37852 >seq11 Length=236632 Score = 114 bits (126), Expect = 1e-20 Identities = 113/146 (77%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 26835 ATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAACAAAGA 26894 ||||| | ||||| |||||||| ||||| ||||| || ||||| ||||||||| | Sbjct 22 ATCGAAAATGTCAAGCAAAAGATCCAAGACAAGGAAGGTATCCCTCCTGATCAACAACGT 81 Query 26895 CTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAACATTCAA 26954 ||||||| || |||||| || |||||||||| | | | | || || || ||||| ||| Sbjct 82 CTCATTTTCGCCGGCAAGCAGCTCGAAGATGGTCGTACTTTGAGTGATTACAACATCCAA 141 Query 26955 AAAGAATCTACTATCCATCTGGTCCT 26980 |||||||||||| | || ||||||| Sbjct 142 AAAGAATCTACTCTTCACTTGGTCCT 167 >seq91 Length=92626 Score = 113 bits (124), Expect = 4e-20 Identities = 107/137 (78%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 |||||||| || | ||||| |||||||| || || ||||| || ||||| |||||| Sbjct 70128 GACACCATTGACAATGTCAAGCAAAAGATCCAAGATAAGGAAGGTATCCCTCCTGATCAA 70069 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 ||| | ||||||| || ||| |||||||||||||| | | | | | | || || || ||| Sbjct 70068 CAACGTCTCATTTTCGCCGGTAAACAACTCGAAGACGGTCGTACCTTGAGTGATTACAAC 70009 Query 26949 ATTCAAAAAGAATCTAC 26965 |||||||| |||||||| Sbjct 70008 ATTCAAAAGGAATCTAC 69992 >seq106 Length=79482 Score = 100 bits (110), Expect = 3e-16 Identities = 302/461 (66%), Gaps = 33/461 (7%) Strand=Plus/Plus Query 119655 ACACGTTTTTCaaaaaaaTTAGTCTTGCCCTCAAGAGATATGTTATTCATAAACTCGAAA 119714 ||||| |||||||| || || |||||||| | ||||| || | | |||||| || || Sbjct 37116 ACACGCTTTTCAAAGAAGTTGGTCTTGCCTTGGAGAGAGATCATGTCCATAAAGTCAAAT 37175 Query 119715 GGATTTGCAGTGTTGAAATGCTTGTCGTAGCCCAACTCGAACAAC----AGTCGATCTGC 119770 ||||| | || || || ||||||| | ||||| || |||| || ||||| || Sbjct 37176 GGATTAGTAGCCATGTAAATCTTGTCGAA-CCCAA---GAGCAACCATGAGACGATCAGC 37231 Query 119771 CACAAACTCGATGTATTCGCACATGGATTGCGAATTCATGCCCAACATAGCGACCGGTAA 119830 || || || ||||||| ||||| | ||||||||||| | | ||| || || | Sbjct 37232 AACGAATTCAATGTATTGACACATCAAGGCAGAATTCATGCCAATGAGAGCAACGGGAAG 37291 Query 119831 AGCATTGGTAAAGAAATCCTTTTCAATGTCGACCGCTTCTACAA--ACATACTCAACAC- 119887 ||||| || || || || | ||||||| ||| ||||| | | | || || || | Sbjct 37292 AGCATCCGTCAAAAATTCTTGTTCAATGCTGACAGCTTCCAAGATGATATCCTTGACGCG 37351 Query 119888 --CTTGGTCTTGGAGAGCTTGTTCTTTTCGGGAATATATTTATTGTAGTATAGACAAGCA 119945 ||||| || ||| |||| | ||| | ||| | ||||||||| Sbjct 37352 TTCTTGG-CTAGGA-CGCTTACGAAGGT-GGGTAAATA-----------AAAGACAAGCA 37397 Query 119946 AAGTCGGTGTGTAGTCCTTCGTCTCTGGAAATGAGTTCGTTGCTGTAAGTCAAGCCGGGT 120005 ||||| || || || ||||| || | | || | ||| |||||| | ||||| ||||| Sbjct 37398 AAGTCAGTATGAAGACCTTCATCACGACAGATCAATTCATTGCTGAATGTCAAACCGGGC 37457 Query 120006 AGAGCTCCTTTTTTCGAGTCTTTGATATAGTAGATTGCAGCAAAACTACCAGaaaaaaaG 120065 | || |||| |||| | |||| | |||||| |||||| || ||| Sbjct 37458 ATCAAACCACGTTTC------TTGAGCCAAAAGATGGAAGCAAAGGAACCAGAGAAGAAG 37511 Query 120066 ACGCCTTCGACGATAGCAAAAGCGACCATGCGTTCGGCGAA 120106 | |||||||| |||||| || || | ||| || || || Sbjct 37512 ATACCTTCGACAGCAGCAAAGGCAACAAGGCGCTCAGCAAA 37552 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478659049363200