Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizopus_20microsporus_20var._20microsporus_20[genbank_20GCA_5F00208 3745.1_202017-04-12] 560 sequences; 24,950,816 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq91 96.9 3e-15 seq11 96.9 3e-15 seq109 84.2 2e-11 seq70 84.2 2e-11 >seq91 Length=92626 Score = 96.9 bits (106), Expect = 3e-15 Identities = 112/151 (74%), Gaps = 0/151 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | ||| || || || || | ||| || |||||||||||||||||||| ||| Sbjct 69962 CCACCACGAAGACGGAGAACCAAGTGAAGGGTAGATTCCTTTTGAATGTTGTAATCACTC 70021 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||| || ||| || || || || || ||| | || | ||| || || || |||||| Sbjct 70022 AAGGTACGACCGTCTTCGAGTTGTTTACCGGCGAAAATGAGACGTTGTTGATCAGGAGGG 70081 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGA 131158 || ||||| || || ||| || ||||||| Sbjct 70082 ATACCTTCCTTATCTTGGATCTTTTGCTTGA 70112 >seq11 Length=236632 Score = 96.9 bits (106), Expect = 3e-15 Identities = 128/178 (72%), Gaps = 0/178 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 || || || | ||| || || || || | || || || ||||| ||||||||||| ||| Sbjct 182 CCGCCACGAAGACGAAGGACCAAGTGAAGAGTAGATTCTTTTTGGATGTTGTAATCACTC 123 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || || || || ||||||||||| ||| | || | ||| || || || |||||| Sbjct 122 AAAGTACGACCATCTTCGAGCTGCTTGCCGGCGAAAATGAGACGTTGTTGATCAGGAGGG 63 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGA 131185 || ||||| ||||| ||| || ||||||| | || | | |||| | |||||||| Sbjct 62 ATACCTTCCTTGTCTTGGATCTTTTGCTTGACATTTTCGATACTATCAGAGGACTCGA 5 >seq109 Length=78937 Score = 84.2 bits (92), Expect = 2e-11 Identities = 160/236 (68%), Gaps = 0/236 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | ||| || || || || | || || |||||||||||||| || ||||| Sbjct 18294 CCACCACGGAGACGAAGGACCAAGTGAAGAGTAGATTCCTTTTGAATGTTATAGTCGCTT 18353 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||| || || || || || || || || |||| | ||| || || || ||||| Sbjct 18354 AGGGTACGACCATCTTCGAGTTGTTTACCAGCAAAGATGAGACGTTGTTGATCAGGAGGA 18413 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || ||||| ||||| || || || || | | || | ||| || | || |||| Sbjct 18414 ATACCTTCCTTGTCTTGAATCTTTTGTTTTACATTGTCGATAGTGTCAGAAGATTCGACT 18473 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATGACTTATTT 131243 || | |||| || || || || || || || || || || ||||||| ||||| Sbjct 18474 TCTAAAGTAATTGTCTTTCCAGTAAGTGTCTTGACAAAGATTTGCATGATATATTT 18529 >seq70 Length=105670 Score = 84.2 bits (92), Expect = 2e-11 Identities = 444/701 (63%), Gaps = 11/701 (2%) Strand=Plus/Plus Query 145084 CACACGACGCAAATACACGTTAGACGTGAAGGGTTCAAAAGACTCGTTATTGCCCAGGAT 145143 ||||||||| || | ||| || ||| | ||||||||| | || || || || || Sbjct 3327 CACACGACGGGTGTAGAAGTTGGATGTGTAAGGTTCAAAACATTCATTGAAACCGAGCAT 3386 Query 145144 TTGAGCGGTCGTTGCGGTGGGCATGTACGCCACCAATAATGAATTGCGCAGGCCGTGCTT 145203 ||||| || | || || ||||| || |||| | || ||||| | || ||||| Sbjct 3387 TTGAGAAGTGGAGGCAGTAGGCATAGGAGCAACCAGCAGAGAGTTGCGGACACCATGCTT 3446 Query 145204 CTTGATGTCTTCCTTTAGCGTACCCCAATCCCATAGCGAAGTCGGCCTCACGTCCCACAT 145263 || | |||||| || | |||| ||||| || || || | || | |||||| Sbjct 3447 AGCAATCTTTTCCTTGAGTGCGGCCCAGTCCCAGAGGTTGGTAGGTGTGACATTCCACAT 3506 Query 145264 GTCGTACTGCAAAATGCCCTCGCTGGCGGGGCTGCCTTGAAAGGAACTGTAACTGCCCCA 145323 ||| || |||| || |||| | | |||||||||| | ||| |||| || | Sbjct 3507 GTCATATTGCAGGATACCCTTGGACACAGGGCTGCCTTCATAGGTTTCGTAAGGTCCATA 3566 Query 145324 AGTTTTGGCGAGCTCGCAACTCGCCTCCAGAGCGCCGAAATAAATTGTCTCGGCAATTTG 145383 ||| || | |||||| || ||||| || | || || || || ||||| Sbjct 3567 CTTTTCAGCCAACTCGCAGGAGGCTTCCAGGGCAGCATGGTAGATGGTTTCAAAGATTTG 3626 Query 145384 CCTGTTGAGCAGCATCGCTTCATCGCTCTCGTACGGCATGCGCAGCAGTACAAAAGCATC 145443 |||| | | || | |||||| ||| | || || || | |||| || Sbjct 3627 AATGTTCAACTGCTTGGCTTCAGGTGAATCGAATGGATAACGAAGAGCCATGAAAGTGTC 3686 Query 145444 GGCGAGCCCCTGTATTCCCACGCCGATGGGCCGATGTTTCATGTTGCTCATCCTCGCCGA 145503 ||| | || || | || | || || || | ||| || ||||| ||| | | | Sbjct 3687 GGCTAAGCCTTGAACACCTAAACCAATCGGTCTGTGTCTCTTGTTGG--ATCTTT-CGGC 3743 Query 145504 CTCGAT---AGGATATCGATTACGGTCGATAATTTTATTCAAGTTTCGCACTACTACCTT 145560 ||||| |||||| ||| ||||| || || |||||||||| | ||||| Sbjct 3744 TTCGATGACAGGATAGTAATTGATATCGATGATCTTGTTCAAGTTTCTAGTGATAACCTT 3803 Query 145561 TGTAATGTGCCGCAACTTTTCAAAGTCAAACCGAGCCTCGTCAACGACCACACAGCTATT 145620 |||| | ||| |||| || ||| || | || | || |||| || || Sbjct 3804 GGTAACATCGTGCAGTTTTTGGAAATCATACTTTTC-TCT--ATTGATCACATAGGTAGG 3860 Query 145621 GACGGCGATCGACGCCAAATTACAAACTGCCGTCTCCTC-GGCGTCGCTGTATTGTACGA 145679 | || || || ||||| ||||| || || || || || ||| ||||| || | Sbjct 3861 CAGAGCAATGGAGGCCAAGTTACAGACAGCGACTTCATCAGGACTCGA-GTATTCAACAA 3919 Query 145680 TCTCGGCGCACAAATTGCTACATTTGATGGTTCCCAGATTTTGCTGATTACTTTTCCTGT 145739 | || | |||| |||||| || ||||| || |||| |||||||||||||| || |||| Sbjct 3920 TTTCTGTACACAGATTGCTGCACTTGATCGTACCCAAGTTTTGCTGATTACTCTTTCTGT 3979 Query 145740 TGCACGCGTCCTTGTAGAGCATGTACGGTCCGCCAGTCTCC 145780 | || || ||||| ||||| ||| | || ||| |||||| Sbjct 3980 TACAAGCATCCTTATAGAGTATGAATGGATTGCCTGTCTCC 4020 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 472009495910400