Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizopus_20microsporus_20var._20microsporus_20[genbank_20GCA_5F00208 3745.1_202017-04-12] 560 sequences; 24,950,816 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq70 443 3e-119 seq106 262 5e-65 seq53 116 5e-21 >seq70 Length=105670 Score = 443 bits (490), Expect = 3e-119 Identities = 1377/2115 (65%), Gaps = 40/2115 (2%) Strand=Plus/Plus Query 61880 GTACGTAGATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTC 61939 ||||| || || ||||| || || |||| || ||| || ||||| |||||||| Sbjct 2992 GTACGAAGGTAATACATGCCTGTCTTTAATCCCTTTTGCCAGCCATAAAAGTGCATACTG 3051 Query 61940 GTTAGTTTGGAATAACTCGGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATG 61999 || || || | | | || || || ||| ||| |||| | ||||||||| || || Sbjct 3052 GTGAGCTTACCAAAGTTGGGTTCAGCCATAAAGATGTTCAAACTTTGACTTTGGTCAATA 3111 Query 62000 AAGGCTCCCCTGTCTGCAGCCATTTTTATAATCGTCTTTTGTGGAATTTCCCAAATAGTT 62059 | || || | || |||||||| | || || || ||| | |||||||| | ||| Sbjct 3112 TACGCACCACGATCAGCAGCCATGTCAATGATAGTACGTTGAGAGATTTCCCAGACAGTC 3171 Query 62060 TTATAAAC-TCGCTTAATATCTTCTGGAAGGTTTGTA--TTCTGAATGGATCCACCATCT 62116 || || | || | || | | ||| | | | | |||||||| || || || || Sbjct 3172 TTGTAGAGATCTTTCAAGTTTTGAGGGATGCTGGGCACGTTCTGAATAGACCCTCCGTCA 3231 Query 62117 GCCATAATCCTATTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGG 62176 ||||| ||| | ||||| | ||||| ||||| | | ||| | | | | || Sbjct 3232 GCCATGATCATGTTCTTCACATCATCGTTCCAGAGACCCATATCGACCAGATCACGGAGT 3291 Query 62177 AGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTG 62236 | || || || | ||| |||| || || | || | || ||||| | || Sbjct 3292 AACCAAGGGTTGACCATTTGGTATTCACCTGAGAGCACACGACGGGTGTAGAAGTTGGAT 3351 Query 62237 GTATACGGTTCCACAGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATA 62296 || || ||||| | | | ||||| || | ||||||| ||| || ||||| |||||| Sbjct 3352 GTGTAAGGTTCAAAACATTCATTGAAACCGAGCATTTGAGAAGTGGAGGCAGTAGGCATA 3411 Query 62297 GGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTG--ATTTTATCTTTTAGAGGTT 62354 || || |||| | | || | | ||| ||| | | || || || || || | Sbjct 3412 GGAGCAACCAGCAGAGAGTTGCGGACACC--ATGCTTAGCAATCTTTTCCTTGAGTGCGG 3469 Query 62355 CCCAATTCCAAAGATCCGACGGTACAACNNNNNNNNNNNNNNNTTGTAGAATACCGTT-- 62412 |||| | ||| || | | ||| || ||| || ||||| || Sbjct 3470 CCCAGTCCCAGAGGTTGGTAGGTGTGACATTCCACATGTCATATTGCAGGATACCCTTGG 3529 Query 62413 --ACTGGCGTACGATCCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAA 62470 || || | | || |||| || ||||| ||||| | ||| ||||| | || || Sbjct 3530 ACACAGGGCTGC----CTTCATAGGTTTCGTAAGGTCCATACTTTTCAGCCAACTCGCAG 3585 Query 62471 CTCGCCTCTAATGCACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGAT-CTTGCGC 62529 || || | ||| | | || |||||||| ||||| | | || | | |||| || Sbjct 3586 GAGGCTTCCAGGGCAGCATGGTAGATGGTTTCAAAGATTTGAATGTTCAACTGCTTG-GC 3644 Query 62530 TTCCAGGCTATCAAATGGATAATTTAAGAGA-ATAAACGCGTCTGCTAATCCTTGAACAC 62588 ||| | ||| ||||||||| ||||| || || | ||| ||||| |||||||||| Sbjct 3645 TTCAGGTGAATCGAATGGATAACG-AAGAGCCATGAAAGTGTCGGCTAAGCCTTGAACAC 3703 Query 62589 CAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAAT 62648 | | ||| || ||||| |||||||| || || |||| ||||| | |||||| |||| Sbjct 3704 CTAAACCAATCGGTCTGTGTCTCTTGTTGGATCTTTCGGCTTCGATGACAGGATAGTAAT 3763 Query 62649 TAATATCTATAATTTTATTGAGATTTCTGACAATTACTTTGACCACATCCTTCAGTTTGA 62708 | ||||| || || || || | ||||| || || ||| ||||| | |||||| Sbjct 3764 TGATATCGATGATCTTGTTCAAGTTTCTAGTGATAACCTTGGTAACATCGTGCAGTTTTT 3823 Query 62709 GAAAATCAAA---TCGCCCATCTATTACAAACATGTTCAATGCAACAGATGCCAGATTAC 62765 | |||||| | | | || || ||| | | || |||| || |||| |||| Sbjct 3824 GGAAATCATACTTTTCTCTATTGATCACATAGGTAGGCAGAGCAATGGAGGCCAAGTTAC 3883 Query 62766 AAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACT 62825 | || || || |||| || | || |||| | || || || || ||||| || |||| Sbjct 3884 AGACAGCGACTTCATCAGGACTCGAGTATTCAACAATTTCTGTACACAGATTGCTGCACT 3943 Query 62826 TGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGA 62885 |||| || || || ||||| |||||||||||| ||||||| ||||||||||| || |||| Sbjct 3944 TGATCGTACCCAAGTTTTGCTGATTACTCTTTCTGTTACAAGCATCCTTATAGAGTATGA 4003 Query 62886 ATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTA 62945 ||||| | || || || | |||| ||| | ||| || | ||| | | ||||||| | Sbjct 4004 ATGGATTGCCTGTCTCCGTTTGAGCTTCCAAAATGGCATACCACAGCTTTTGAGCCTTGA 4063 Query 62946 TTATAGATTTGTATCTCTT--TTCTCTTTCGTATAGTGTATACAATCGTTCGAACTCGTC 63003 | | | | || ||||| ||| | ||||||| | ||| | | |||||||| Sbjct 4064 TCGTT--TCTCTAGCTCTTCCTTCACGTTCGTATTTTTCATAGAGAGCAACAAACTCGTC 4121 Query 63004 TCCCCAAACATTGTCCAGTCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTC 63063 ||||| | | | | ||||||| |||| ||||| | || ||||| || || | Sbjct 4122 ACCCCAGATTTCATGTAATCCAGGAGCCTCATTGGGACAAAACAGAGACCAATCACCACC 4181 Query 63064 ATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA-AATAGATCTCTGG 63122 || | || || | ||| || |||||||||||||| ||||| ||| || ||||| | | Sbjct 4182 GTCTCTGACACGCTGCATGAAAAGATCAGGAATCCAGAGAGC-ATAGAACAGATCACGAG 4240 Query 63123 TTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAAT 63182 || ||| || || || || ||| | || | || | | ||| || | || Sbjct 4241 CCCTGATTTCGTCTTTGCCAAAGTTTTTTCGCAAGTCTAAAAAGGTAAAAATGTCTGCAT 4300 Query 63183 GCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGT 63242 |||| ||||||||||| || || | | || || || || || || || ||||| | | Sbjct 4301 GCCAAGGTTCCAAGTACATTGCGAATGCGCCCGGACGCTTATTACCACCTTGATCGACAT 4360 Query 63243 ATCTAGCGGTGTTATTATAAACTCTCAACATTGG-AATAATACCATTGGATGTACCATTG 63301 | | ||| || || || |||| | | ||| || || ||| || ||||| ||| ||| Sbjct 4361 AACGAGCCGTATTGTTGAAAACACGTAGCATGGGCAACAAT-CCGTTGGAGTAACCGTTG 4419 Query 63302 GTCCCTGAGATATAGCTTCCACTGGCACGAATATTACTAATTGATAGACCTATTCCCCCT 63361 || || | || || |||||| |||||||| || ||| || || || || ||| Sbjct 4420 GTGCCGGCAATGTATGATCCACTAGCACGAATGTTGTGAATGTTTAAGCCAATACCGCCT 4479 Query 63362 GCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCA 63421 || | || |||||| || || ||| | ||| |||||||| || || || ||| Sbjct 4480 GCTGTCTTGGAGATTTGAGCACAGATTTTGAGCGTCTCATAGATACCTTCGATCGAATCT 4539 Query 63422 TCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAAT 63481 || ||||| | || | || || |||||| ||| ||||| || || ||||||||| Sbjct 4540 TCTTTCATGGTGAGCAAGAAGCAAGAAGACATCTGGGGACGAGGTGTGCCTGCATTAAAT 4599 Query 63482 AAGGTAGGAGAAGCGTGAGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCT 63541 | |||||| |||||| ||||| || |||| || | | ||||| |||||||||||| Sbjct 4600 AGAGTAGGACTAGCGTGTGTAAAGTATCTTTCGGACATCAAGTTGTATGTCTCAATAGCT 4659 Query 63542 GAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTT 63601 | || ||||| | ||| || || | || |||||||| | || |||||||| | | Sbjct 4660 GCATCAATATCGGTTCCATGGATACCGATCGCAACACGCATGATCAAATGCTGAGGACGT 4719 Query 63602 TCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAA 63661 || | |||||| || || || | | ||| || || | |||||| |||||||| Sbjct 4720 TCGGCAATCTTGCCGTCAATCTTGAGAAGGTAAGAACGCTCGAGAGTTTTGAAACCAAAG 4779 Query 63662 TAGTTGTA--TGAAAAGTCTCGTTCGTAAATAATAACCGAGTT---GAGTTTATCCTTAT 63716 ||||||| ||||| || || || || || || | ||||| | | | | | |||| Sbjct 4780 AAGTTGTACTTGAAA--TCACGGTCATAGATGATGGCAGAGTTCAAGCGGTCAGCGTTAT 4837 Query 63717 ATTTGTTAACTACATCCATGGTAATACTTGAAATAATAGGAAAATGTTTCCCATTTTTAG 63776 || |||| | | || | | || || || || | ||||| || | || | Sbjct 4838 CCATGACAACTTTGTAC---GTTTCATTAGAGATCATGGGTGAGTGTTTGCCTGTCTTGG 4894 Query 63777 GATTGACATAGTTGAATAAATCCTCCATCACTTCACTAAATAGtttttttGTTTCTTTGT 63836 |||| ||||| ||| | || || || || |||| | ||| | ||||| ||||| |||| Sbjct 4895 GATTCACATAATTGTACAAGTCTTCAATTACTTGAGAAAAGACCTTTTTGGTTTCCTTGT 4954 Query 63837 GTAGATTTGATACGGCTATTCTAGCGGCTAGAATGGCATAATCCGGATGTTGTGTAGTAC 63896 | ||||| || | ||| || | || || | | |||||||| ||||| | || || Sbjct 4955 GAAGATTAGAAATGGCAATGCGCGCAGCCAACAGAGCATAATCAGGATGGCGAGTGGTCA 5014 Query 63897 AAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAATTCTACCGTTGTTACACCATTATATA 63956 | || ||| |||| || || || | || | ||| || ||||| ||||| | |||| Sbjct 5015 TATAAGCAGCTGTTTCTGCAGCAAGGTTATCGAGTTCGACAGTTGTAACACCTTGGTATA 5074 Query 63957 TTCCTTGGATAACCT 63971 || |||||||| Sbjct 5075 CACCAGAGATAACCT 5089 >seq106 Length=79482 Score = 262 bits (290), Expect = 5e-65 Identities = 565/837 (68%), Gaps = 17/837 (2%) Strand=Plus/Plus Query 32385 ACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATGATATATTTTCCATGAAATCGAAT 32444 ||||| ||||| || || || || || |||| | || || | ||||| || || ||| Sbjct 37116 ACACGCTTTTCAAAGAAGTTGGTCTTGCCTTGGAGAGAGATCATGTCCATAAAGTCAAAT 37175 Query 32445 GGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAATCAATCTATCTGCGACA 32504 ||||| ||| | | ||||| || | || || | || || | | ||| || || Sbjct 37176 GGATTAGTAGCCATGTAAATCTTGTCGAACCCAAGAGCAACCATGAGACGATCAGCAACG 37235 Query 32505 AATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGTTTAACTGGAAGAGCC 32564 ||||| || ||| ||||| || ||||||| || || || ||| |||||||| Sbjct 37236 AATTCAATGTATTGACACATCAAGGCAGAATTCATGCCAATGAGAGCAACGGGAAGAGCA 37295 Query 32565 ACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAATAGATCTTACTGTTTCT 32624 | || | ||||||||||||||| ||| || || || ||| | || |||| Sbjct 37296 TCCGTCAAAAATTCTTGTTCAATGCTGACAGCTTCCAAGATGATATCCTTGACGCGTTCT 37355 Query 32625 TCACTCGGTGGAT-ACAATAAATGTTTAAACATCAAACATGCGAAATCGCAGTGTAGACC 32683 | || || | | || | | || |||| | | ||| || || || || ||||| Sbjct 37356 TGGCTAGGACGCTTACGA-AGGTGGGTAAATAAAAGACAAGCAAAGTCAGTATGAAGACC 37414 Query 32684 CTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTT 32743 || || | || || ||||| ||| || || | |||||||| | ||||| || || Sbjct 37415 TTCATCACGACAGATCAATTCATTGCTGAATGTCAAACCGGGCATCAAACCACGTTTCTT 37474 Query 32744 AAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGC 32803 |||||||| ||||| ||||| || ||||| ||||| || ||||| || || |||||||| Sbjct 37475 GAGCCAAAAGATGGAAGCAAAGGAACCAGAGAAGAAGATACCTTCGACAGCAGCAAAGGC 37534 Query 32804 AATAAGTCTCTCTCCATA---ACCGGCGCTGTCATGTA-TCCACTTTTGAGCCCAATCGG 32859 || ||| | ||| || | |||| | | | | | ||||||| |||||||| | Sbjct 37535 AACAAGGCGCTCAGCAAAGGAACCG----TTTGAGGAAATCCACTTGAAGGCCCAATCAG 37590 Query 32860 CCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGATAGtttttttCATTAC 32919 |||| | || | |||||| || || || |||||| |||||| | ||| || | Sbjct 37591 CCTTTCTCTTGATACAAGGGATAGTGTCAATAGCAGAAAAGAGCATTTCTTTCTCTTGGT 37650 Query 32920 TATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGG 32979 ||||||| | ||| || |||||||||||||| || |||| | |||||||||||||| Sbjct 37651 TATCTTTGATATAAGTGTCAATCAAAAGACTGTAAGTTTCTGCGTGAATGTTTTCAATCA 37710 Query 32980 CCATTTGAAATCCGTAGAAGCATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTT 33039 |||||||| || ||||| ||| |||| || | ||||| ||||| |||||| ||| Sbjct 37711 TGATTTGAAAGCCATAGAAACATTTAGCTTCAGGAATCTTGACTTCATCACAAAA--GTT 37768 Query 33040 CTG--CTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTT 33097 || | || |||||||| || || || || | ||||| || ||||| ||| | Sbjct 37769 TTGAACCAAGTTTTCATTAACAATGCCATCTGAACCAGCAAAGAAGGCCAAGACACGAGA 37828 Query 33098 TATAAAATATTTTTCGTCTGGTGTTAGTTTATT---CCAATCATTGATATCTTTAGATAT 33154 ||||| | ||| | | || | ||| || |||||||| | ||| || | Sbjct 37829 GATAAAGAAACGTTCATTTTCGGTCATTTTGTTTTCCCAATCATGAAGATCCTTGCTCAA 37888 Query 33155 ATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGAT 33211 ||| | |||||| |||||||||| || || || || |||||||| | | |||||| Sbjct 37889 ATCGATTTCTTCAGCTGTCCAAAAGGAAGCTTCAGCTTTTTTATAGAATTGCCAGAT 37945 >seq53 Length=125223 Score = 116 bits (128), Expect = 5e-21 Identities = 278/420 (66%), Gaps = 3/420 (1%) Strand=Plus/Minus Query 61888 ATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTT 61947 ||||||||| || || ||||| || |||| | ||||| |||||| || | ||| Sbjct 93110 ATAGTACATGCCAGTCTTTAGTCCCTTCTTCCAGGCATAAAAGTGCATAGAAGTCAATTT 93051 Query 61948 GGAATAACTCGGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCC 62007 | | | | || || || || | ||||||||||||| |||||| || |||||||| Sbjct 93050 GCCAAAGTTTGGTTCGGCAGTAAATAAATTCATAGATTGAGATTGATCAATAAAGGCTCC 92991 Query 62008 CCTGTCTGCAGCCATTTTTATAATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAAC 62067 || || || ||||| | ||||| || |||||| ||| ||||| | || || || | Sbjct 92990 TCTATCAGCGGCCATGTCAATAATAGTTCTTTGTGAAATCTCCCACACGGTCTTGTATAG 92931 Query 62068 TCGCTTAATATCTTCTGGAAGGTTTG---TATTCTGAATGGATCCACCATCTGCCATAAT 62124 | || | ||| || |||| | | || ||| || || |||| || || || Sbjct 92930 TTTTTTGAGATCATCAGGAATGCCAGGAATACGCTGGATACTACCGCCATGAGCGATCAT 92871 Query 62125 CCTATTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGG 62184 | | |||||||| | |||||||||||| | || | | | | | | | |||| | Sbjct 92870 CATGTTCTTGATGTTATCATTCCATAAATCGAGTTCAATGAGATCATTCAATAAATGCTG 92811 Query 62185 ATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGG 62244 || |||| ||| ||||| || || | || || |||||||| || || || || Sbjct 92810 GTTGACTATTTGGAATTCACCGCTTTGAACACGACGCGTATAAATATTGCTAGTGTAAGG 92751 Query 62245 TTCCACAGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCAC 62304 || | | || ||||| ||||| |||||| ||| ||||| |||||||| || || Sbjct 92750 CTCGAAGCATTCGTTATTACCCAATATTTGACTAGTGCTAGCAGTAGGCATAGGAGCAAC 92691 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633627564576000