Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizopus_20microsporus_20var._20microsporus_20[genbank_20GCA_5F00208 3745.1_202017-04-12] 560 sequences; 24,950,816 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq109 123 2e-23 seq11 116 3e-21 seq165 107 2e-18 >seq109 Length=78937 Score = 123 bits (136), Expect = 2e-23 Identities = 157/214 (73%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| ||||| ||||| | || || || | || || | ||||| || || ||| Sbjct 18520 ATGCAAATCTTTGTCAAGACACTTACTGGAAAGACAATTACTTTAGAAGTCGAATCTTCT 18461 Query 25059 GACACTATCGAGTCACTG--AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116 ||||||||||| || || || ||||| || ||||| ||||| ||||| ||||| | Sbjct 18460 GACACTATCGA--CAATGTAAAACAAAAGATTCAAGACAAGGAAGGTATTCCTCCTGATC 18403 Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176 |||| || | || ||||| || |||||| | ||||||| ||| || | |||| || | Sbjct 18402 AACAACGTCTCATCTTTGCTGGTAAACAACTCGAAGATGGTCGTACCCTAAGCGACTATA 18343 Query 25177 ATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 | |||||||| ||||| || || || || || || Sbjct 18342 ACATTCAAAAGGAATCTACTCTTCACTTGGTCCT 18309 >seq11 Length=236632 Score = 116 bits (128), Expect = 3e-21 Identities = 126/167 (75%), Gaps = 0/167 (0%) Strand=Plus/Plus Query 25044 GAAGTGGAGTCGTCTGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGG 25103 ||||| ||||| ||||| | |||||| | |||||||| ||| ||||| ||||| Sbjct 1 GAAGTCGAGTCCTCTGATAGTATCGAAAATGTCAAGCAAAAGATCCAAGACAAGGAAGGT 60 Query 25104 ATTCCACCTGACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACT 25163 || || ||||| ||||| || | ||||| |||||||| || | ||||||| ||| ||| Sbjct 61 ATCCCTCCTGATCAACAACGTCTCATTTTCGCCGGCAAGCAGCTCGAAGATGGTCGTACT 120 Query 25164 GTGGGCGATTACAATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || | |||||||| || ||||||||||| || || || || || || Sbjct 121 TTGAGTGATTACAACATCCAAAAAGAATCTACTCTTCACTTGGTCCT 167 >seq165 Length=49949 Score = 107 bits (118), Expect = 2e-18 Identities = 104/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 25077 AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAACAGCGGATTATTTTTGCC 25136 |||||||| || ||||| ||||| ||||| ||||||||||| || |||| |||||| Sbjct 37976 AAGCAAAAGATTCAAGACAAGGAAGGTATTCCTCCTGACCAACAACGTCTTATCTTTGCC 37917 Query 25137 GGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAATATTCAAAAAGAATCCACG 25196 || |||||| | ||||| | ||| || || |||| ||||| || ||||| ||||| || Sbjct 37916 GGTAAACAACTCGAAGACGGTCGTACCTTGAGCGACTACAACATCCAAAAGGAATCTACT 37857 Query 25197 CTACATTTAGTGCT 25210 || || ||||| || Sbjct 37856 CTCCACTTAGTTCT 37843 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433325042536400