Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizopus_20microsporus_20var._20microsporus_20[genbank_20GCA_5F00208 3745.1_202017-04-12] 560 sequences; 24,950,816 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq135 125 2e-23 seq7 113 1e-19 seq106 111 3e-19 seq251 87.8 4e-12 seq148 87.8 4e-12 >seq135 Length=64565 Score = 125 bits (138), Expect = 2e-23 Identities = 680/1061 (64%), Gaps = 57/1061 (5%) Strand=Plus/Minus Query 333321 TCTTCACCGGAGGCATAACGCCATTGGATATACTGGTTGGGTGTCATGTCAAGATGATCC 333380 |||||||||| | |||||||||||||| || | |||||| || |||| | ||| Sbjct 20738 TCTTCACCGGTGTGGTAACGCCATTGGATGTATTCGTTGGGGGTTTTGTCCAAGTGACGT 20679 Query 333381 TCGATGTGGTGGAAAGCATGCTGTGCCACGTAAGCAAGACGCATATTTGGATGCTTCCAA 333440 |||||||||||||||||||| || || || || |||| ||||| || ||||| |||| Sbjct 20678 TCGATGTGGTGGAAAGCATGTTGGGCGACATAGGCAATACGCAAGTTAGGATGTCTCCAG 20619 Query 333441 ACACTTCCGTTGGTGGCTTCCATTTGCCCCGTGAGCACCTTAATGAGAGTGCTTTTTCCC 333500 ||| | || || || |||| || || | || ||| || | ||| || || Sbjct 20618 ACAGTACCAACCTCGGACTCGATTTCACCAGTCAACAACTTGATCAAGGTGGACTTACCA 20559 Query 333501 GCACCATTTTCGCCTACCACACCAATCCTGGAGTTCAGCGATACCTGGGCATTCACGTTG 333560 ||||| || || | || ||| | ||| || || || | |||| | | || Sbjct 20558 GCACCGTTGGGACCAATGACGGCAACACGAGAGGCAAGAGA-ACAT-TGCATAGA-GATG 20502 Query 333561 TCAAAGATTAGTTT---TTCCGTACCCGGATACTTGAACCCCACACCGCGTAGCTTCATG 333617 || | | | | || || | ||| || || | ||| | || | ||||| | Sbjct 20501 TCGATCAATTGCTTGCGGTCAGAACCAGGGTATTGGAAGTCGACGTTCTTCATCTTCAAG 20442 Query 333618 ATGGCACGGTCCTTCGAAGTGATACCCTCGAGGAACCCGGGCTCGGGGAACTTCCACGTG 333677 || ||||| ||||| | ||||||| || | ||| || || || ||||| || || Sbjct 20441 ATAGCACGTTCCTTAGTCTTGATACCTTCCAAGAAACCAGGTTCAGGGAAAGAGAACTTG 20382 Query 333678 GTCTTCGTCTCGGTAAGGGCGTAGTAACTCGCTGATTCGGGACGCTTCTTCACGAACTCG 333737 | | || | | || ||||||| || | ||| |||||| ||||| ||| Sbjct 20381 ATTTGAGTAGCTTCCAAGGAGTAGTAAGAAGCAGCACGAGGAACCTTCTTGACGAATTCG 20322 Query 333738 GACAGATTTCCCTTGTACTTCTTCAGCTTTAGGTTAGGTTCGTAATGGATAATAGAGGTG 333797 |||| || ||||| || ||| ||||| ||| || ||||| || || || || Sbjct 20321 GACAAGTTACCCTTATAACGCTTGAGCTTGTAGTTGGGCTCGTAGTGAATGATGTCGGAA 20262 Query 333798 CAAACAGCGTCGAGGAACCCGGAGTCGTGTGACACAATCACGCACGAAACGTCCTTAAGG 333857 || ||| || | ||| || |||||||| || ||||| | | | | ||| ||| | Sbjct 20261 CAGACATGATCCAAGAAACCAGAGTCGTGGGAAACAATGATGGAGGTAACAGTCTTCAAA 20202 Query 333858 TTGATCAGGTA----TTCAATCAGCCACCTCACGTTAGAC-ACAGAAAGATGGTTGGTCG 333912 | ||||| | ||| ||| || ||||| ||| ||| | || ||||| | Sbjct 20201 CCAAGGAGGTAGTTCTCCAACCAGGCA----ACGTT-GACAACATCCAAGTGATTGGTAG 20147 Query 333913 GCTCGT-CAAGAAGTAGTAGCTTTGCGTTCAGGAGCATTGCACGTGCAAGAGCGAGTTTC 333971 | |||| ||| ||| || | | ||||||| | ||| ||||| |||||||| || ||| Sbjct 20146 GTTCGTCCAACAAG-AGGATATCAGCGTTCATCAACATAGCACGGGCAAGAGCAAGCTTC 20088 Query 333972 ATTTTCCACCCTCCTGAAAGAGTGTT----AATTGGGGCAGATTGGCGCTCAAT--ATCA 334025 || ||||| || || |||| ||| ||| | || |||| || | ||| Sbjct 20087 ATCTTCCAACCACC----AGAGAGTTCACCAAT--AGCCATCTTGGTAACCATTTGTTCA 20034 Query 334026 ---AAGCCAACCGATT-CTAGAGTA-GTTACGATCTTTTCACGAGACCAAATGTTTTCCT 334080 |||||| ||| | |||| | || || | || | || || | || || Sbjct 20033 GAGAAGCCA---TATTCCAAGAGGATCTTGCGGAC-TTCCTCGGGATC----CTTGGTCT 19982 Query 334081 TTACTTGTTCATCATTGGCA---ATGAAGTCAATGATAGCCATGTTAGAATCGGACCCGT 334137 || | || |||| |||||||||| | || | | || || || || | Sbjct 19981 CAAC---ACCCTCGGAGGCAAGGATGAAGTCAACCAAAGGAGTATCAGCCTCAGAACCAT 19925 Query 334138 CGAGATCGTGTTCCACGTAAGCAGTTTTCAAAACATCCGCA-GAG--GGGAACCCTTCAA 334194 ||| ||||||||| ||||| |||| || || || | | ||| ||||| ||||||| Sbjct 19924 CGATATCGTGTTCGACGTAGACAGTCTT---AAGCTCAGAACGAGGAGGGAAGCCTTCAA 19868 Query 334195 GCTGACCGTTCACAATAGCGCGCATCAGAGTTGATTTACCCGCCCCGTTTGGCCCACACA 334254 || |||| |||| |||||||| ||||| || ||||| || || | ||||| | Sbjct 19867 CTTGTTCGTTGGCAATGGCGCGCATAAGAGTAGACTTACCACAACCATTGGCACCACAGA 19808 Query 334255 GACCGTAGCGGTTTCCACGCTTCAGATTGAACCG-CGTATTGTTCAGAAGAATTTTTCCA 334313 |||| || || |||||||| ||| ||| | ||| ||| || | || || || Sbjct 19807 GACCATAACGACGGCCACGCTTGAGA-CGAAGAGAGGTACGGTTAAGCAAGATCTTGGCA 19749 Query 334314 CCATATGCCAGAGAAAATTCACAATCACACAGATCCTCACC 334354 ||||| || ||||| || ||||| | ||| ||||| ||||| Sbjct 19748 CCATAAGCAAGAGAGAACTCACAGTTACAGAGATCTTCACC 19708 >seq7 Length=279440 Score = 113 bits (124), Expect = 1e-19 Identities = 439/681 (64%), Gaps = 18/681 (3%) Strand=Plus/Minus Query 333320 GTCTTCACCGGAGGCATAACGCCATTGGATATACTGGTTGGGTGTCATGTCAAGATGATC 333379 ||||||||| | | |||||||||||||| || | |||||| || |||| | ||| Sbjct 49467 GTCTTCACCAGTGTGGTAACGCCATTGGATGTATTCGTTGGGGGTTTTGTCCAAGTGACG 49408 Query 333380 CTCGATGTGGTGGAAAGCATGCTGTGCCACGTAAGCAAGACGCATATTTGGATGCTTCCA 333439 |||||||| ||||||||||| || || || || |||| ||||| || ||||| |||| Sbjct 49407 TTCGATGTGATGGAAAGCATGTTGAGCGACATAGGCAATACGCAAGTTAGGATGTCTCCA 49348 Query 333440 AACACTTCCGTTGGTGGCTTCCATTTGCCCCGTGAGCACCTTAATGAGAGTGCTTTTTCC 333499 ||| | || || || |||| || || | || ||| || | || || || Sbjct 49347 GACAGTACCAACCTCGGACTCAATTTCACCAGTCAACAACTTGATCAAGGTAGACTTACC 49288 Query 333500 CGCACCATTTTCGCCTACCACACCAATCCTGGAGTTCAGCGATACCTGGGCATTCACGTT 333559 ||||| || || | || ||| | |||| || || || |||| | | | Sbjct 49287 AGCACCGTTGGGACCAATGACGGCAACACGGGAGGCAAGAGAACACT--GCATAGA-GAT 49231 Query 333560 GTCAAAGATTAGTTT---TTCCGTACCCGGATACTTGAACCCCACACCGCGTAGCTTCAT 333616 ||||| | | | || || | ||| ||||||| ||| | ||| | |||| Sbjct 49230 GTCAATCAGTTGCTTGCGGTCAGAACCAGGATACTGGAAGTCGACATTCTTCATTTTCAA 49171 Query 333617 GATGGCACGGTCCTTCGAAGTGATACCCTCGAGGAACCCGGGCTCGGGGAACTTCCACGT 333676 ||| ||||| ||||| | ||||||| || | ||| || ||||| ||||| | | Sbjct 49170 GATTGCACGTTCCTTAGTCTTGATACCTTCCAAGAAACCAGGCTCAGGGAAAGAGAATTT 49111 Query 333677 GGTCTTCGTCTCGGTAAGGGCGTAGTAACTCGCTGATTCGGGACGCTTCTTCACGAACTC 333736 | | | || | | || |||||| || | ||| |||||| ||||| || Sbjct 49110 GATTTGAGTAGCTTCCAAGGAATAGTAAGAGGCAGCACGAGGAACCTTCTTGACGAATTC 49051 Query 333737 GGACAGATTTCCCTTGTACTTCTTCAGCTTTAGGTTAGGTTCGTAATGGATAATAGAGGT 333796 ||||| || ||||| || ||| ||||| || |||||||| || || || | Sbjct 49050 GGACAAGTTACCCTTATAACGCTTGAGCTTATAATTGGGTTCGTAGTGAATGATGTCCGA 48991 Query 333797 GCAAACAGCGTCGAGGAACCCGGAGTCGTGTGACACAATCACGCACGAAACGTCCTTAAG 333856 || ||| || | ||| || |||||||| || ||||| | | | | ||| ||| | Sbjct 48990 ACAGACATGATCCAAGAAACCAGAGTCGTGGGAGACAATGATGGAGGTAACAGTCTTCAA 48931 Query 333857 GTTGATCAGGTA----TTCAATCAGCCACCTCACGTTAGAC-ACAGAAAGATGGTTGGTC 333911 | ||||| | ||| ||| || ||||| ||| ||| | || ||||| Sbjct 48930 ACCAAGGAGGTAGTTCTCCAACCAGGCA----ACGTT-GACAACATCCAAGTGATTGGTA 48876 Query 333912 GGCTCGT-CAAGAAGTAGTAGCTTTGCGTTCAGGAGCATTGCACGTGCAAGAGCGAGTTT 333970 || |||| ||| ||| || | | ||||||| | ||| ||||| |||||||| || || Sbjct 48875 GGTTCGTCCAACAAG-AGGATATCAGCGTTCATCAACATAGCACGGGCAAGAGCAAGCTT 48817 Query 333971 CATTTTCCACCCTCCTGAAAG 333991 ||| ||||| || || || || Sbjct 48816 CATCTTCCAACCACCAGAGAG 48796 >seq106 Length=79482 Score = 111 bits (122), Expect = 3e-19 Identities = 141/194 (73%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 243562 CTTATTGGCATGAACTCTGAACTCATGGGACAGTACATCGAATTCGTAGCCGACCGCATT 243621 || ||||||||||| |||| | ||| | || ||||| |||||||| || || || | Sbjct 37279 CTCATTGGCATGAATTCTGCCTTGATGTGTCAATACATTGAATTCGTTGCTGATCGTCTC 37220 Query 243622 TTCATCGCGCTTGGTTATGAGAAAGTGTACAACTCCAAGAACCCCTTTGCCTTTATGGAG 243681 | | || ||||| | || || | |||| | | || || |||| ||||||||| Sbjct 37219 ATGGTTGCTCTTGGGTTCGACAAGATTTACATGGCTACTAATCCATTTGACTTTATGGAC 37160 Query 243682 CTCATTTCGCTTCAAGGGAAAACTAACTTCTTCGAAAAGCGTGTCAGTGATTATCAACGC 243741 | || || || ||||| || || |||||||| |||||||||||| ||||||||||| Sbjct 37159 ATGATCTCTCTCCAAGGCAAGACCAACTTCTTTGAAAAGCGTGTCTCCGATTATCAACGT 37100 Query 243742 CCTGGTGTGATGAA 243755 ||||||| ||||| Sbjct 37099 GCTGGTGTCATGAA 37086 >seq251 Length=24034 Score = 87.8 bits (96), Expect = 4e-12 Identities = 208/309 (67%), Gaps = 4/309 (1%) Strand=Plus/Minus Query 298088 ATAGGCGTGATGAACTTCTTCAAGAACCCTGGAATTTCTAGAAGATTAGGGAAACA-GCT 298146 ||||| ||||| |||| | | |||||| ||||| || ||||| ||||||||| | Sbjct 13559 ATAGGTGTGATAAACTCCAAGAGGAACCCAGGAATATCCAGAAGCG-AGGGAAACATGGA 13501 Query 298147 ATGGAAAAAGTTCATGACGAGACCAGAAATGTGAGTTCCGTCAACATCCGCGTCGGTCAT 298206 || || |||||| |||| ||||| |||||| | |||||| ||| || ||||| Sbjct 13500 ATCGATAAAGTTGATGATCAGACCCTTAATGTGTGAACCGTCATGATCTTGATCTGTCAT 13441 Query 298207 GATCATCACATGACCGTAACG-AAGCGAGGACGTGTCTTTGTACACTTTACCGGTTTGAA 298265 |||||||| | | || || || || | | | || ||| |||||| |||| Sbjct 13440 GATCATCAAACGGCCATATCGCAACTCATCAACACT-TTCATACTTTTTACCATGCTGAA 13382 Query 298266 GGCCGAGAATTTGTTTGAGCGCTGTGATTTCTTCGTTCTTCGTGATGCTTGCCACGGATG 298325 |||| ||||| |||| | |||||||||| || ||| ||| || || Sbjct 13381 GGCCAAGAATAGCCTTGATGTTTTTGATTTCTTCATTTTTCATGAGTTCAGCATTAGAAA 13322 Query 298326 CATCGCGGACATTCAATAGTTTTCCACGAAGAGGGAACACTCCATATCTCTCGCGACCGA 298385 | || || || ||||| ||||| ||||| | ||||| || ||||| || ||||| | Sbjct 13321 CGTCACGAACGTTCAACAGTTTGCCACGGATGGGGAATACACCATAGTAGTCACGACCCA 13262 Query 298386 CCACGGACA 298394 | || |||| Sbjct 13261 CTACTGACA 13253 >seq148 Length=59013 Score = 87.8 bits (96), Expect = 4e-12 Identities = 93/123 (76%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 333320 GTCTTCACCGGAGGCATAACGCCATTGGATATACTGGTTGGGTGTCATGTCAAGATGATC 333379 |||||| || | ||||||||||| || || || | ||| || ||| | || | || | Sbjct 17981 GTCTTCGCCAGTAGCATAACGCCACTGAATGTATTCGTTTGGCGTCTTATCCAAGTGTTG 18040 Query 333380 CTCGATGTGGTGGAAAGCATGCTGTGCCACGTAAGCAAGACGCATATTTGGATGCTTCCA 333439 |||||||| ||||| ||||| || || ||||| |||| ||| | ||| ||||||||||| Sbjct 18041 TTCGATGTGATGGAAGGCATGTTGAGCAACGTAGGCAATACGTAAATTGGGATGCTTCCA 18100 Query 333440 AAC 333442 || Sbjct 18101 TAC 18103 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102872086836000