Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizopus_20microsporus_20var._20microsporus_20[genbank_20GCA_5F00208 3745.1_202017-04-12] 560 sequences; 24,950,816 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq11 107 2e-18 seq109 100 3e-16 seq70 100 3e-16 seq91 98.7 1e-15 >seq11 Length=236632 Score = 107 bits (118), Expect = 2e-18 Identities = 116/154 (75%), Gaps = 0/154 (0%) Strand=Plus/Minus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 |||||| || | | ||| || | |||| || ||||||||||| ||||||||||| Sbjct 183 ACCGCCACGAAGACGAAGGACCAAGTGAAGAGTAGATTCTTTTTGGATGTTGTAATCACT 124 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | || || | ||||| |||||||||||||| ||||||| || || || || ||||| Sbjct 123 CAAAGTACGACCATCTTCGAGCTGCTTGCCGGCGAAAATGAGACGTTGTTGATCAGGAGG 64 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACA 64369 || ||||| || ||||| || |||||||| ||| Sbjct 63 GATACCTTCCTTGTCTTGGATCTTTTGCTTGACA 30 >seq109 Length=78937 Score = 100 bits (110), Expect = 3e-16 Identities = 144/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 64241 TGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGC 64300 |||| || ||||| ||||||||||| || || | ||| || | ||||| || || Sbjct 18318 TGAAGAGTAGATTCCTTTTGAATGTTATAGTCGCTTAGGGTACGACCATCTTCGAGTTGT 18377 Query 64301 TTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTT 64360 || || ||| | ||||| || || || || |||||||| ||||| || ||||| || ||| Sbjct 18378 TTACCAGCAAAGATGAGACGTTGTTGATCAGGAGGAATACCTTCCTTGTCTTGAATCTTT 18437 Query 64361 TGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTC 64420 || |||||| || | || ||| | || ||||||| ||| | ||||| || || Sbjct 18438 TGTTTTACATTGTCGATAGTGTCAGAAGATTCGACTTCTAAAGTAATTGTCTTTCCAGTA 18497 Query 64421 AAAGTTTTTACGAAAATTTGCAT 64443 | || || || || |||||||| Sbjct 18498 AGTGTCTTGACAAAGATTTGCAT 18520 >seq70 Length=105670 Score = 100 bits (110), Expect = 3e-16 Identities = 355/546 (65%), Gaps = 19/546 (3%) Strand=Plus/Plus Query 154905 ACGCGTTTCATAAACAAATCCGGCACCCACAAAGCGTACAACAAATCACGCGCCTTTTTG 154964 || || | ||| || | ||| || | ||| | ||| || |||| |||||| ||| | | Sbjct 4189 ACACGCTGCATGAAAAGATCAGGAATCCAGAGAGCATAGAACAGATCACGAGCCCTGATT 4248 Query 154965 TCTTCAGCGCCCATGTTTCGCTTTA--AATTCAAAAAATC-ATATATGTCGGCGTGCCAC 155021 || || ||| | |||| ||| || || ||||| | | ||||| || ||||| Sbjct 4249 TCGTCTTTGCCAAAGTTT---TTTCGCAAGTCTAAAAAGGTAAAAATGTCTGCATGCCAA 4305 Query 155022 GGCTCTAAATATACGGCCATCGCGCCTTTGCGTTTT---CCTCCTTGATCCACGTGACGC 155078 || || || || | || | ||||| || || || |||||||| || | ||| Sbjct 4306 GGTTCCAAGTACATTGCGAATGCGCCCGGACGCTTATTACCACCTTGATCGACATAACGA 4365 Query 155079 ACACAATTATTGTACACGCGCAACAATGGTTCCACGCCGCTGGCCGTGCCGTTGGTGCC- 155137 | ||| ||| | || || | || || || ||| ||| ||||||||||| Sbjct 4366 GCCGTATTGTTGAAAACACGTAGCATGGGCAACAATCCGTTGGAGTAACCGTTGGTGCCG 4425 Query 155138 ---ACGTATCGCGCTGCCGCGAGCACGCGCTTTATGAACATTAACGCCCAAACCTCC-GC 155193 | |||| | | || | |||||| || |||| || | ||| | ||| || || Sbjct 4426 GCAATGTAT---GAT-CCACTAGCACGAATGTTGTGAATGTTTAAGCCAATACCGCCTGC 4481 Query 155194 CGTATTTAGATATTTGCGCACAGTCCGCCAAAGTTTCGTACATTCCTTTGATGCTGTCTT 155253 || || || ||||| |||||| | || || || || |||| ||| |||| Sbjct 4482 TGTCTTG-GAGATTTGAGCACAGATTTTGAGCGTCTCATAGATACCTTCGATCGAATCTT 4540 Query 155254 CTTTCAACGTCAACAAGAAACACGAAGATAATTGAGGTTGAGGGCAGCCGGCCGCAAATA 155313 |||||| || | |||||| || ||||| | || || |||| ||| || ||||| Sbjct 4541 CTTTCATGGTGAGCAAGAAGCAAGAAGACATCTGGGGACGAGGTGTGCCTGCATTAAATA 4600 Query 155314 ATGTAGGACTAGCGTGTGTAAACATTTTGTTGGCGGTTAAGTTGTAAGTTTCGATGGCGG 155373 |||||||||||||||||||| | | | || | |||||||| || || || || | Sbjct 4601 GAGTAGGACTAGCGTGTGTAAAGTATCTTTCGGACATCAAGTTGTATGTCTCAATAGCTG 4660 Query 155374 CGTCAATGTCACGACCGTGTATACCGATCGCCACGCGCATCAGCATGTGTTGAATGCGCT 155433 | ||||| || || || ||||||||||| || ||||| | || || ||| || | Sbjct 4661 CATCAATATCGGTTCCATGGATACCGATCGCAACACGCATGATCAAATGCTGAGGACGTT 4720 Query 155434 CCGCAA 155439 | |||| Sbjct 4721 CGGCAA 4726 >seq91 Length=92626 Score = 98.7 bits (108), Expect = 1e-15 Identities = 99/129 (77%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 64241 TGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGC 64300 |||| || ||||| ||||||||||||||||| | ||| || ||||||| || || Sbjct 69986 TGAAGGGTAGATTCCTTTTGAATGTTGTAATCACTCAAGGTACGACCGTCTTCGAGTTGT 70045 Query 64301 TTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTT 64360 || ||||| ||||||| || || || || ||||| || ||||| || ||||| || ||| Sbjct 70046 TTACCGGCGAAAATGAGACGTTGTTGATCAGGAGGGATACCTTCCTTATCTTGGATCTTT 70105 Query 64361 TGCTTTACA 64369 ||||| ||| Sbjct 70106 TGCTTGACA 70114 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499641302486400