Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizopus_20microsporus_20var._20microsporus_20[genbank_20GCA_5F00208 3745.1_202017-04-12] 560 sequences; 24,950,816 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq109 118 1e-21 seq70 100 3e-16 seq53 95.1 1e-14 seq165 91.5 1e-13 >seq109 Length=78937 Score = 118 bits (130), Expect = 1e-21 Identities = 148/203 (73%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 45138 TGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGT 45197 || || || ||||||||||| || ||||| ||||| | ||| | ||| || | |||| Sbjct 18318 TGAAGAGTAGATTCCTTTTGAATGTTATAGTCGCTTAGGGTACGACCATCTTCGAGTTGT 18377 Query 45198 TTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTT 45257 || || || | || | ||||| || || || ||||| ||||| || |||||||| ||| Sbjct 18378 TTACCAGCAAAGATGAGACGTTGTTGATCAGGAGGAATACCTTCCTTGTCTTGAATCTTT 18437 Query 45258 TGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTT 45317 ||||| | || | ||||| ||||| |||||||| | ||||| || || || || Sbjct 18438 TGTTTTACATTGTCGATAGTGTCAGAAGATTCGACTTCTAAAGTAATTGTCTTTCCAGTA 18497 Query 45318 AGAGTTTTTACAAAAATTTGCAT 45340 || || || ||||| |||||||| Sbjct 18498 AGTGTCTTGACAAAGATTTGCAT 18520 >seq70 Length=105670 Score = 100 bits (110), Expect = 3e-16 Identities = 882/1407 (63%), Gaps = 36/1407 (3%) Strand=Plus/Minus Query 122898 AAGGTCGCCGAACGTATTCAACATATGCTCATGCGCGTCGCTATAGGCGTGCACGGACGC 122957 ||| | ||||||||| ||| ||| || ||||||| || || || || | || ||| | Sbjct 4730 AAGATTGCCGAACGTCCTCAGCATTTGATCATGCGTGTTGCGATCGGTATCCATGGAACC 4671 Query 122958 GACATCGAAAACGCGACCGAAACTTACGATTTGATGTCTCAAAAATTTTTCACGCACGCG 123017 || || || || | || || ||| | |||||||| ||| || || || ||||| Sbjct 4670 GATATTGATGCAGCTATTGAGACATACAACTTGATGTCCGAAAGATACTTTACACACGCT 4611 Query 123018 AGTCCCACTTTGTTCGCCGCCGGCACGAAGTTG-CCTCAGTTGTCTTCGTGTTTTTTGCT 123076 ||||| ||| | || || ||||| | | | || ||| ||||||| || || ||||| Sbjct 4610 AGTCCTACTCTATTTAATGCAGGCAC-ACCTCGTCCCCAGATGTCTTCTTGCTTCTTGCT 4552 Query 123077 CACCTTGCGCGAAGACAGCATCACCGGTATCTATGAAACTTTGCGCGAT-TGCGCGTTGA 123135 |||| || ||||| ||| ||||||||||| || | | || || || | Sbjct 4551 CACCATGAAAGAAGATTCGATCGAAGGTATCTATGAGACGCT-CAAAATCTGTGCTCAAA 4493 Query 123136 TTTCCAAATTTGGCGGCGGCATAGGCGTGAACGTGCACGACGTAAGAGGCCGCGGAAGCC 123195 | ||||| | ||||| || ||| | ||| | ||| || | | | | ||| Sbjct 4492 TCTCCAAGACAGCAGGCGGTATTGGCTTAAACATTCACAACATTCGTGCTAGTGGATCAT 4433 Query 123196 GCATCAGAAGCACCGACGGAATCGCCTCCGGGCTCGAATCCATGCTGCGAGTTTACAATA 123255 ||| ||||| |||| | || ||| | ||||||| || |||| ||| | Sbjct 4432 ACATTGCCGGCACCAACGGTTACTCCAACGGATTGTTGCCCATGCTACGTGTTTTCAACA 4373 Query 123256 ACGCCGTGCGGCACGTCGACCAGGGCGG---CAAACGCAAAGGCGCGATGGCGATCTATC 123312 | | | || | ||||| || || || || || ||||| | || || || Sbjct 4372 ATACGGCTCGTTATGTCGATCAAGGTGGTAATAAGCGTCCGGGCGCATTCGCAATGTACT 4313 Query 123313 TAGAACCGTGGCACGTTG--ATGTGTACGATTTTTTAAATTT---AAAACGCAACATGGG 123367 | ||||| ||||| | | || | ||| |||||| | || |||| ||| | || Sbjct 4312 TGGAACCTTGGCATGCAGACATTTTTAC--CTTTTTAGACTTGCGAAAA---AACTTTGG 4258 Query 123368 GGCGGAAGAAAAGAAAGCCCGCGATTTGTTGTACGCTTTATGGGTACCCGATTTGTTTAT 123427 || |||| | || || ||| |||| || ||| | ||| | || ||| | || || Sbjct 4257 CAAAGACGAAATCAGGGCTCGTGATCTGTTCTATGCTCTCTGGATTCCTGATCTTTTCAT 4198 Query 123428 GCGACGCGTAAAAGACGACGGCGTGTGGTCGCTCATGTGTCCCGATCGGTGTCCCGGCTT 123487 || || || | ||||| || | ||||| || | |||||| || | ||| || || Sbjct 4197 GCAGCGTGTCAGAGACGGTGGTGATTGGTCTCTGTTTTGTCCCAATGAGGCTCCTGGATT 4138 Query 123488 GAGCGACGTTTACGGCAATCAGTTTGACGAGTTGTACGCGCAATACGAGCGCGAAGGCAA 123547 || | | || | |||||| | | || | ||||||| || ||||| | Sbjct 4137 ACATGAAATCTGGGGTGACGAGTTTGTTGCTCTCTATGAAAAATACGAACGTGAAGG--A 4080 Query 123548 ACAGGT-TAGTCAGGTTC-CGGCACGTGATTTGTTCAAATTTATTATCGAAACACAAGTC 123605 | || | || | | || ||| | | ||| | ||| | ||| | ||| Sbjct 4079 AGAGCTAGAGAAACGATCAAGGCTCAAAAGCTGTGGTATGCCATTTTGGAAGCTCAAACG 4020 Query 123606 GAAACCGGAACGCCGTACATGCTCTACAAAGACGCCTGCAACAGGAAAACCAATCAGAGC 123665 || || || | || | ||| ||||| || || || || ||||| || | |||||| Sbjct 4019 GAGACAGGCAATCCATTCATACTCTATAAGGATGCTTGTAACAGAAAGAGTAATCAGCAA 3960 Query 123666 AACTTGGGAACAATAAAATGTAGTAATCTTTGCTCCGAAATTATCGAATACAGCGA-TGC 123724 |||||||| || || || || || ||||| || | |||||| | |||||| ||| | | Sbjct 3959 AACTTGGGTACGATCAAGTGCAGCAATCTGTGTACAGAAATTGTTGAATAC-TCGAGTCC 3901 Query 123725 CGATCAAGTGGCCGTGTGTAATTTGGCTTCGATT----TGCGTGAATCGTTGCG-TCGAA 123779 ||| |||| || || ||||| ||||| || ||| ||| | | | || | || | Sbjct 3900 TGATGAAGTCGCTGTCTGTAACTTGGCCTCCATTGCTCTGCCT--ACCTATGTGATCAAT 3843 Query 123780 AACGGCGCTTTTAATTTCCAAACGCTCAAACGCATAACAAAAACTGT-AGTAAAGAATTT 123838 | | | | ||||||||| || | | || || | | | || | || || Sbjct 3842 AGAGAAAAGTATGATTTCCAAAAACTGCACGATGTTACCAAGGTTATCACTAGA-AACTT 3784 Query 123839 GAACAAAATTATCGATGTTAATTTTTATCCTTTGGAGGAAGCGCGTTTG-TCTAATTTGA 123897 |||||| || |||||| | |||| |||||| | ||||| || | || || || Sbjct 3783 GAACAAGATCATCGATATCAATTACTATCCTGTCATCGAAGC-CGAAAGATCCAACAAGA 3725 Query 123898 AACACAGACCGGTCGGAGTGGGCATTCAAGGGTTGGCCGACGCGTTTGTAATGCTGCGCA 123957 |||||||||| | || | || ||||||| || |||||| | || | || || Sbjct 3724 GACACAGACCGATTGGTTTAGGTGTTCAAGGCTTAGCCGACACTTTCATGGCTCTTCGTT 3665 Query 123958 TGCCGTACGAAAGCGACGAAGCAAAGTTGCTTAATACGCAAATAGCCGAAACAATTTATT 124017 || | ||| ||||| ||| | | || | ||||| ||||| || || Sbjct 3664 ATCCATTCGATTCACCTGAAGCCAAGCAGTTGAACATTCAAATCTTTGAAACCATCTACC 3605 Query 124018 ACGGCGCTTTGGAGGCGAGCTGCGAACTTGC-GAAAATTCACGGCGCGTACGAAAGTTAC 124076 | | || |||| || |||||| | || ||||| | | || | ||||||| || Sbjct 3604 ATGCTGCCCTGGAAGCCTCCTGCGAGTTGGCTGAAAAGT-ATGGACCTTACGAAACCTAT 3546 Query 124077 GCGGGCAGCCCGGCGAGCCGAGGTATTTTGCAGTACGACATGTGGAATGCTACACCGACA 124136 | |||||||| | | | ||||| |||| || ||||||||||||| ||||| || Sbjct 3545 GAAGGCAGCCCTGTGTCCAAGGGTATCCTGCAATATGACATGTGGAATGTCACACCTACC 3486 Query 124137 AATTTGTGGGACTGGAGCGTTTTAAAACAACGCATATCGACGCACGGTTTGCGTAACTCG 124196 || | ||||||||| || | || || || | | ||| ||| | || ||||| Sbjct 3485 AACCTCTGGGACTGGGCCGCACTCAAGGAAAAGATTGCTAAGCATGGTGTCCGCAACTCT 3426 Query 124197 CTGTTGGTGGCGTACATGCCGACGGCAACCACTGCTCAAATTTTAGGAAACAACGAATCC 124256 ||| |||| || ||||| || || ||||| ||||||| | || ||| |||| Sbjct 3425 CTGCTGGTTGCTCCTATGCCTACTGCCTCCACTTCTCAAATGCTCGGTTTCAATGAATGT 3366 Query 124257 TTCGAGCCGTTCACTAACAATTTGTAC 124283 || || || | ||| ||| || ||| Sbjct 3365 TTTGAACCTTACACATCCAACTTCTAC 3339 >seq53 Length=125223 Score = 95.1 bits (104), Expect = 1e-14 Identities = 305/471 (65%), Gaps = 2/471 (0%) Strand=Plus/Plus Query 124182 GGTTTGCGTAACTCGCTGTTGGTGGCGTACATGCCGACGGCAACCACTGCTCAAATTTTA 124241 ||| | |||||||| || | || || ||||| || || | |||| |||||| || Sbjct 92670 GGTGTCCGTAACTCTCTTCTTGTTGCTCCTATGCCTACTGCTAGCACTAGTCAAATATTG 92729 Query 124242 GGAAACAACGAATCCTTCGAGCCGTTCACTAACAATTTGTACGTGCGACGAGTGTTAGCC 124301 || || ||||||| ||||||||| | ||||| |||| | || ||| || || | | Sbjct 92730 GGTAATAACGAATGCTTCGAGCCTTACACTAGCAATATTTATACGCGTCGTGTTCAAAGC 92789 Query 124302 GGCGATTTTCAAGTGATAAATCATCATTTGGTGGACGACTTGGTGGCGTTAAATTTGTAC 124361 || || || ||| | | || || ||||| || | || | | | | |||| | Sbjct 92790 GGTGAATTCCAAATAGTCAACCAGCATTTATTGAATGATCTCATTGAACTCGATTTATGG 92849 Query 124362 GATGAAAACATGCGCAACGAAATTATTGCGGCCGGTGGCAGCGTGCAGCGCATCGCTTCG 124421 |||| ||||| ||| || || || || || || | ||||| || || Sbjct 92850 AATGATAACATCAAGAACATGATGATCGCTCATGGCGGTAGTATCCAGCGTATTCCTGGC 92909 Query 124422 ATTCCGGAACACGTCAAGCAACTGTACAAAACCGTGTGGGA-AATGAAAAATAAACGATT 124480 ||||| || | |||| |||| ||||| ||||||||||| | | | || ||| ||| Sbjct 92910 ATTCCTGATGATCTCAAAAAACTATACAAGACCGTGTGGGAGATTTCACAAAGAACTATT 92969 Query 124481 AATTGAAATGGCCGTCGACCGAGGCGCGTACACGGATCAAAGTCAATCTTTTAACGTGTT 124540 ||||| ||||||| || |||| || | | |||||| ||||||| | || | || Sbjct 92970 -ATTGACATGGCCGCTGATAGAGGAGCCTTTATTGATCAATCTCAATCTATGAATTTATT 93028 Query 124541 TGTAGCGGAACCCACCTACGCCCGCATGACCAGCATACACATGCACGCGTGGAGCAGCGG 124600 | || ||||| | || | | |||| || ||| | | || |||| | || Sbjct 93029 TACTGCCGAACCAAACTTTGGCAAATTGACTTCTATGCACTTTTATGCCTGGAAGAAGGG 93088 Query 124601 ACTCAAAACGGGCATGTATTACTTAAGAACCAAACCGGCGGCCGATGCCAT 124651 ||| || || |||||||| || || ||| | | ||| || | ||||| || Sbjct 93089 ACTAAAGACTGGCATGTACTATTTGAGATCTAGACCTGCAGTTGATGCAAT 93139 >seq165 Length=49949 Score = 91.5 bits (100), Expect = 1e-13 Identities = 114/154 (74%), Gaps = 2/154 (1%) Strand=Plus/Plus Query 45132 ACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCC 45191 |||| || || || |||||||||||||| || || ||||| | ||| | || || Sbjct 37846 ACTAAGTGGAGAGTAGATTCCTTTTGGATGTTGTAGTCGCTCAAGGTACGACCGTCTTCG 37905 Query 45192 AATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGA 45251 | |||||| || || | || | ||||| ||||| || ||||| ||||| || |||||| Sbjct 37906 AGTTGTTTACCGGCAAAGATAAGACGTTGTTGGTCAGGAGGAATACCTTCCTTGTCTTGA 37965 Query 45252 ATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAA 45284 || ||||| |||| || | || | |||||||||| Sbjct 37966 ATCTTTTGCTTGA-CGTTGTCAATGGTGTCGGAA 37998 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 452000035977600