Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizopus_20microsporus_20var._20microsporus_20[genbank_20GCA_5F00208 3745.1_202017-04-12] 560 sequences; 24,950,816 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq70 217 2e-51 seq106 111 2e-19 seq251 104 3e-17 seq53 86.0 8e-12 >seq70 Length=105670 Score = 217 bits (240), Expect = 2e-51 Identities = 854/1328 (64%), Gaps = 30/1328 (2%) Strand=Plus/Plus Query 115903 TAGATGTTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAG 115962 |||| ||||| ||||| || ||||| || |||||| ||| | ||||| | |||||| Sbjct 3340 TAGAAGTTGGATGTGTAAGGTTCAAAACATTCATTGAAACCGAGCATTTGAGAAGTGGAG 3399 Query 115963 GCTGTGGGCATGGGTGCCATGAGAAGGCTGTTGCGGAGACCCACCCCCCTAATGCGTTCC 116022 || || ||||| || || | || || |||||||| ||| | ||| |||| Sbjct 3400 GCAGTAGGCATAGGAGCAACCAGCAGAGAGTTGCGGACACCATGCTTAGCAATCTTTTCC 3459 Query 116023 TTGAGGGCGTCCCAGTCGTAG---TTG--AGCTTTGTCTCCCCCTCCCACATATCAAACT 116077 ||||| ||| ||||||| || ||| || | || | | |||||| ||| | | Sbjct 3460 TTGAGTGCGGCCCAGTCCCAGAGGTTGGTAGGTGTGACA-----TTCCACATGTCATATT 3514 Query 116078 GGAGGATACCTTGGGACGCTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTCCG 116137 | |||||||| | |||| | || || ||| | || || || || || | || | Sbjct 3515 GCAGGATACCCTTGGACACAGGGCTGCCTTCATAGGTTTCGTAAGGTCCATACTTTTCAG 3574 Query 116138 CCAATTCGGAGCTCGCCTCGAGGGCTGCGTGATACATTGTCTCAAAAATGCGAGCATTCA 116197 |||| ||| || || || ||||| || || || || || ||||| || || |||| Sbjct 3575 CCAACTCGCAGGAGGCTTCCAGGGCAGCATGGTAGATGGTTTCAAAGATTTGAATGTTCA 3634 Query 116198 TTGCCTTGGCCTCGTCGGAATCAAACGCGAGACGGCACAAA-ATAAATACATCCGCGAGA 116256 |||||| || ||||| || | || | | | | || || || || | Sbjct 3635 ACTGCTTGGCTTCAGGTGAATCGAATG-GATAACGAAGAGCCATGAAAGTGTCGGCTAAG 3693 Query 116257 CCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGA-CTTTCGAGCGGTCTCCAC 116315 ||||| ||||| | ||||| || | |||||| | || || |||||| || || Sbjct 3694 CCTTGAACACCTAAACCAATCGGTCTGTGTCTCTTGTTGGATCTTTCG-GCTTCGATGAC 3752 Query 116316 GGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTC 116375 ||||| |||| ||||||| | | | || | ||| | |||| |||||| || | || Sbjct 3753 AGGATAGTAATTGATATCGATGATCTTGTTCAAGTTTCTAGTGATAACCTTGGTAACATC 3812 Query 116376 ATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATTGA---CATACTTAGGAAGGGC 116432 || || |||| | ||||| | | ||||| ||||| |||| |||| || || Sbjct 3813 GTGCAGTTTTTGGAAATCATACTTT----TCTCT--ATTGATCACATAGGTAGGCAGAGC 3866 Query 116433 GATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGT 116492 || || |||| ||||| |||| | ||||| | | ||| || | |||||| || Sbjct 3867 AATGGAGGCCAAGTTACAGACAGCGACTTCATCAGGACTCGAGTATTCAACAATTTCTGT 3926 Query 116493 ACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGC 116552 ||||| ||| | ||| || || |||||||| | ||||| |||| ||||||| || Sbjct 3927 ACACAGATTGCTGCACTTGATCGTACCCAAGTTTTGCTGATTACTCTTTCTGTTACAAGC 3986 Query 116553 ATCCTTGTAGAGCATATATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCA 116612 |||||| ||||| || |||| | || ||||||||||| | | | ||| || | ||| Sbjct 3987 ATCCTTATAGAGTATGAATGGATTGCCTGTCTCCGTTTGAGCTTCCAAAATGGCATACCA 4046 Query 116613 TA-CATCGGCGGCTGGCACAGTGGCGTTGGCTCGCCCCTCCTCCTCGTACTTTGTGTAGA 116671 | | | | | || | | || | | |||| || || ||||| ||| |||| Sbjct 4047 CAGCTTTTGAGCCTTG-ATCGTTTCTCTAGCTCTTCCTTCACGTTCGTATTTTTCATAGA 4105 Query 116672 GGGCCTCAAACTCTTCACCCACAG-CCTCTGAGAGCCCTGGTGCCTTATCTGGACAGAAG 116730 | || ||||||| |||||| ||| || | || || |||| || ||||| || Sbjct 4106 GAGCAACAAACTCGTCACCC-CAGATTTCATGTAATCCAGGAGCCTCATTGGGACAAAAC 4164 Query 116731 AGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGCC 116790 |||||||| | |||||| || || |||| |||||| || || || |||||||| || Sbjct 4165 AGAGACCAATCACCACCGTCTCTGACACGCTGCATGAAAAGATCAGGAATCCAGAGAGCA 4224 Query 116791 GAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAAG 116850 |||| ||||| ||| | ||| || | || || ||||| || |||||| Sbjct 4225 TAGAACAGATCACGAGCCCTGATTTCGTCTTTGCCAAAGTTTTTTCGCAAGTCTAAAAAG 4284 Query 116851 TCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTGCG---ACGA 116907 | || || || ||||| ||||||| ||||| |||| || ||| || | | Sbjct 4285 GTAAAAATGTCTGCATGCCAAGGTTCCAAGTACATTGCGAATGCGCCCGGACGCTTATTA 4344 Query 116908 CCAGCCTGGTTTACATACCTCGCCGTTGCGTTAAATACGCGAAGCATTGGAATGATACCA 116967 ||| | || | ||||| | ||||| ||| || || || ||||| || | | || Sbjct 4345 CCACCTTGATCGACATAACGAGCCGTATTGTTGAAAACACGTAGCATGGGCAACAATCCG 4404 Query 116968 TCAGATTGGCCATTTGTCCCCCGAATACGAGACTTGTTGGCTCTGACATCGTGGATGTGC 117027 | || | || || || || ||| || | || | | | ||| |||| Sbjct 4405 TTGGAGTAACCGTTGGTGCCGGCAATGTATGATCCACTAGCACGAATGTTGTGAATGTTT 4464 Query 117028 ATACCAATACCCCCTGCCCACTTTGAGATTTGTGCGCACTCCGTGAGACTGCCGTAGATC 117087 | |||||||| ||||| ||| |||||||| || || |||| | | ||||| Sbjct 4465 AAGCCAATACCGCCTGCTGTCTTGGAGATTTGAGCACAGATTTTGAGCGTCTCATAGATA 4524 Query 117088 CCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGTGGCCTTGGT 117147 || |||||||| || | || | | || | |||||| ||||| || || | ||| Sbjct 4525 CCTTCGATCGAATCTTCTTTCATGGTGAGCAAGAAGCAAGAAGACATCTGGGGACGAGGT 4584 Query 117148 GTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAACATACCTTGGGACATCTTATCG 117207 || || || || || || || || | ||||| | || | || ||||||| | | Sbjct 4585 GTGCCTGCATTAAATAGAGTAGGACTAGCGTGTGTAAAGTATCTTTCGGACATCAAGTTG 4644 Query 117208 TAGGTCTC 117215 || ||||| Sbjct 4645 TATGTCTC 4652 >seq106 Length=79482 Score = 111 bits (122), Expect = 2e-19 Identities = 286/433 (66%), Gaps = 7/433 (2%) Strand=Plus/Plus Query 127519 AGCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACC 127578 |||||| || || ||||| || ||||| |||| | |||||| ||| || ||| Sbjct 37394 AGCAAAGTCAGTATGAAGACCTTCATCACGACAGATCAATTCATTGCTGAATGTCAAACC 37453 Query 127579 TGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGAT 127638 ||||| | ||| || ||||| | ||| || || | | ||| || |||||||||||||| Sbjct 37454 GGGCATCAAACCACGTTTCTTGAGCCAAAAGATGGAAGCAAAGGAACCAGAGAAGAAGAT 37513 Query 127639 CCCCTCCACACACGCGAACGCAAATAGACGCTCGGCAAAGGAGCGGGACTTTGTATCAAA 127698 || || ||| || || |||| || ||||| |||||||| | | |||| || Sbjct 37514 ACCTTCGACAGCAGCAAAGGCAACAAGGCGCTCAGCAAAGGAACCG---TTTGAGGAAAT 37570 Query 127699 CCACTTCATCGCCCACTGTGCCTTTTTCTCGATACATGGGACGGTCTGGATCGCTTCAAA 127758 |||||| | ||||| | |||||| ||| |||||| |||| || | || || ||| Sbjct 37571 CCACTTGAAGGCCCAATCAGCCTTTCTCTTGATACAAGGGATAGTGTCAATAGCAGAAAA 37630 Query 127759 GAGTTCCTTCTTTTCTGATGG--ATCTTTGATGTACTTATCTATGAGTTTTGAATATGTT 127816 ||| | || ||||| ||| ||||||||| || | || || | || ||| Sbjct 37631 GAG--CATTTCTTTCTCTTGGTTATCTTTGATATAAGTGTCAATCAAAAGACTGTAAGTT 37688 Query 127817 TCGCCGTGGACCATTTCATTATGGCACTGATACGCGTAGAAAGAGCGCGCTTCGCTTATC 127876 || |||| | ||||| | | ||| | | |||||| | ||||| ||| Sbjct 37689 TCTGCGTGAATGTTTTCAATCATGATTTGAAAGCCATAGAAACATTTAGCTTCAGGAATC 37748 Query 127877 TGTACCTCATCGGCAAAATTGTTATTGATATTCTCAAAAACAATTCCATCGGACCCAGCA 127936 | || ||||| ||| || | | | || ||| |||||| ||||| || |||||| Sbjct 37749 TTGACTTCATCACAAAAGTTTTGAACCAAGTTTTCATTAACAATGCCATCTGAACCAGCA 37808 Query 127937 AAAAACGCCAGGA 127949 || || |||| || Sbjct 37809 AAGAAGGCCAAGA 37821 >seq251 Length=24034 Score = 104 bits (114), Expect = 3e-17 Identities = 201/294 (68%), Gaps = 2/294 (1%) Strand=Plus/Minus Query 176630 TTGAGGATGAGACCCTTAATGTGTGAACCATCGTTATCCGCATCCGTCATAATCATGAGC 176689 |||| ||| |||||||||||||||||||| || | ||| ||| ||||| ||||| | Sbjct 13490 TTGATGATCAGACCCTTAATGTGTGAACCGTCATGATCTTGATCTGTCATGATCATCAAA 13431 Query 176690 CGACCATAGCGAAGCTCGGAAACATCTTGATAATCCTTACCTTGTTGAAGACCCAAAATC 176749 || ||||| || | ||| |||| || ||| | ||||| || ||||| || | ||| Sbjct 13430 CGGCCATATCGCAACTCATCAACACTTTCATACTTTTTACCATGCTGAAGGCCAAGAATA 13371 Query 176750 TTCTTGAGATCATTGAACTCTTGGTTTGATGTGAGTTGCGCCACTGAAGCGTCGCGGACA 176809 ||||| | |||| |||| ||| |||||| || ||| |||| || || Sbjct 13370 GCCTTGATGTTTTTGATTTCTTCATTTTTCATGAGTTCAGCATTAGAAACGTCACGAAC- 13312 Query 176810 TTTTTACA-CTTCCCGCGGAGAGGGAACACACCGTAGTGATCACGACCAACCACAGAGAG 176868 || ||| || || |||| ||||| ||||| |||| |||||||| || || || | Sbjct 13311 GTTCAACAGTTTGCCACGGATGGGGAATACACCATAGTAGTCACGACCCACTACTGACAT 13252 Query 176869 ACCAGCAACTGCGAGGGTCTTCGCGGAATCACCCTCCGTCACGATGAGCGTACA 176922 ||| | | || | ||| || |||||||| || || | ||| || || || Sbjct 13251 GCCACTCAAAACAAGCGACTTAGCTGAATCACCTTCTGTGATGATCAGAGTGCA 13198 >seq53 Length=125223 Score = 86.0 bits (94), Expect = 8e-12 Identities = 147/206 (71%), Gaps = 12/206 (6%) Strand=Plus/Minus Query 115564 TAGTACATCCCCGTCTTGAGCCCCTGCTTCCAGGCATACATATGCATTGAGGACAACTTG 115623 |||||||| || ||||| || |||| |||||||||||| | ||||| || | ||| ||| Sbjct 93109 TAGTACATGCCAGTCTTTAGTCCCTTCTTCCAGGCATAAAAGTGCATAGAAGTCAATTTG 93050 Query 115624 -GAGAGTGTTGGACTTTC--CA-TGAAGAGGTTCATACTTTGGGATTGATCGATGAAGCG 115679 | ||| |||| ||| || | || | |||||| ||| |||||||| || ||| Sbjct 93049 CCAAAGT-TTGG---TTCGGCAGTAAATAAATTCATAGATTGAGATTGATCAATAAAGGC 92994 Query 115680 TCCCCGATCCGCCGCCATATCAATCACATCCTTCATCTTG--ATTTCCCACACAGTTCTG 115737 ||| | ||| || ||||| ||||| || ||| | || || |||||||| || || Sbjct 92993 TCCTCTATCAGCGGCCATGTCAAT--AATAGTTCTTTGTGAAATCTCCCACACGGTCTTG 92936 Query 115738 TAGAGGTTCTTAATATCATCTGGGAT 115763 || || || || | |||||| || || Sbjct 92935 TATAGTTTTTTGAGATCATCAGGAAT 92910 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613502905449600