Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizopus_20microsporus_20var._20microsporus_20[genbank_20GCA_5F00208 3745.1_202017-04-12] 560 sequences; 24,950,816 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq165 111 4e-19 seq11 111 4e-19 seq109 107 5e-18 seq70 102 2e-16 seq91 84.2 5e-11 >seq165 Length=49949 Score = 111 bits (122), Expect = 4e-19 Identities = 121/161 (75%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| | || || | ||||||||| || |||||||||| ||||||||| ||| || Sbjct 37834 CGAAGACGGAGAACTAAGTGGAGAGTAGATTCCTTTTGGATGTTGTAGTCGCTCAAGGTA 37893 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | || ||||| || || || ||||| ||||| ||||| || ||||| ||| ||| ||| Sbjct 37894 CGACCGTCTTCGAGTTGTTTACCGGCAAAGATAAGACGTTGTTGGTCAGGAGGAATACCT 37953 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTC 199569 || || |||||||||||||| ||| || | |||||| Sbjct 37954 TCCTTGTCTTGAATCTTTTGCTTGACGTTGTCAATGGTGTC 37994 >seq11 Length=236632 Score = 111 bits (122), Expect = 4e-19 Identities = 117/154 (76%), Gaps = 0/154 (0%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| | ||||| | ||| ||||| || || ||||||| |||||| ||| |||||| Sbjct 176 CGAAGACGAAGGACCAAGTGAAGAGTAGATTCTTTTTGGATGTTGTAATCACTCAAAGTA 117 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | |||||||| |||||||| |||||||| |||||||| || || || ||| || ||| Sbjct 116 CGACCATCTTCGAGCTGCTTGCCGGCGAAAATGAGACGTTGTTGATCAGGAGGGATACCT 57 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGA 199562 || || || ||||||||||| || ||||| Sbjct 56 TCCTTGTCTTGGATCTTTTGCTTGACATTTTCGA 23 >seq109 Length=78937 Score = 107 bits (118), Expect = 5e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 ||||| | ||| ||||| || |||||||| | ||| ||||| | || | |||||| Sbjct 18309 AGGACCAAGTGAAGAGTAGATTCCTTTTGAATGTTATAGTCGCTTAGGGTACGACCATCT 18368 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || || || || || || ||||||||||| || || || ||| ||| ||||| || Sbjct 18369 TCGAGTTGTTTACCAGCAAAGATGAGACGTTGTTGATCAGGAGGAATACCTTCCTTGTCT 18428 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 ||||||||||| || || |||| ||||| | | ||| || || || || || ||| Sbjct 18429 TGAATCTTTTGTTTTACATTGTCGATAGTGTCAGAAGATTCGACTTCTAAAGTAATTGTC 18488 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || || || || ||||| ||||| Sbjct 18489 TTTCCAGTAAGTGTCTTGACAAAGATTTG 18517 >seq70 Length=105670 Score = 102 bits (112), Expect = 2e-16 Identities = 215/315 (68%), Gaps = 8/315 (3%) Strand=Plus/Plus Query 167768 GCGTCCTTGTAGACGATGAAGGGCATACCAACCTCCGCTTGAGCCACCAAAATGTGGTGC 167827 || ||||| |||| ||||| || | || ||||| |||||| |||||||| | | Sbjct 3985 GCATCCTTATAGAGTATGAATGGATTGCCTGTCTCCGTTTGAGCTTCCAAAATGGCATAC 4044 Query 167828 CAAAGTTCTTGGGCTTTTACGGTAGTTCTCGCTCTTCCTTCTTTTTCGTATCTCTCATAG 167887 || || | ||| || || | || ||| ||||||||||| ||||||| | |||||| Sbjct 4045 CACAGCTTTTGAGCCTTGATCGTTTCTCTAGCTCTTCCTTCACGTTCGTATTTTTCATAG 4104 Query 167888 AGGTCTTCGAAATCCTTCCCGTAAATTTCGTCAAGACCGGGAGCTTCCTTCGGACAAAAG 167947 || | | || || | || | ||||| | | || ||||| || || |||||||| Sbjct 4105 AGAGCAACAAACTCGTCACCCCAGATTTCATGTAATCCAGGAGCCTCATTGGGACAAAAC 4164 Query 167948 AGACTCCAATTTCCATCGGTCTC-GACCCTCTTCATGAAGAGGTCGGAAGTCCAAATCGC 168006 ||| ||||| ||| | ||||| ||| | || |||||| || || | | |||| | || Sbjct 4165 AGAGACCAATCACCA-CCGTCTCTGACACGCTGCATGAAAAGATCAGGAATCCAGAGAGC 4223 Query 168007 GTAGAACAATTGCCTTGCCTTTTTGAGGTCGTCTCCTCC-AGGTTTCTTCGCA--TCCAC 168063 ||||||| | | ||| ||| |||||| || | |||| |||||| || | Sbjct 4224 ATAGAACAGATCACGAGCC---CTGATTTCGTCTTTGCCAAAGTTTTTTCGCAAGTCTAA 4280 Query 168064 AAAAGTAAAGATGTC 168078 ||| ||||| ||||| Sbjct 4281 AAAGGTAAAAATGTC 4295 >seq91 Length=92626 Score = 84.2 bits (92), Expect = 5e-11 Identities = 106/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| | || || | ||| || || || |||||||| | |||||| ||| ||| || Sbjct 69968 CGAAGACGGAGAACCAAGTGAAGGGTAGATTCCTTTTGAATGTTGTAATCACTCAAGGTA 70027 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | || ||||| || || || |||||||| |||||||| || || || ||| || ||| Sbjct 70028 CGACCGTCTTCGAGTTGTTTACCGGCGAAAATGAGACGTTGTTGATCAGGAGGGATACCT 70087 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCAC 199554 || || || ||||||||||| || Sbjct 70088 TCCTTATCTTGGATCTTTTGCTTGAC 70113 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178913141237520