Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizopus_20microsporus_20var._20microsporus_20[genbank_20GCA_5F00208 3745.1_202017-04-12] 560 sequences; 24,950,816 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq106 91.5 1e-13 seq165 84.2 2e-11 seq11 82.4 8e-11 >seq106 Length=79482 Score = 91.5 bits (100), Expect = 1e-13 Identities = 113/155 (73%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 132895 CAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAG 132954 ||||||||||| ||| | || || || | | || | ||| |||||||| ||||| Sbjct 37392 CAAGCAAAGTCAGTATGAAGACCTTCATCACGACAGATCAATTCATTGCTGAATGTCAAA 37451 Query 132955 CCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAG 133014 |||||||| | || ||||| ||||||||||| |||| || || || || |||||| Sbjct 37452 CCGGGCATCAAACCACGTTTCTTGAGCCAAAAGATGGAAGCAAAGGAACCAGAGAAGAAG 37511 Query 133015 ACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTC 133049 | || ||||| || || || || || |||||||| Sbjct 37512 ATACCTTCGACAGCAGCAAAGGCAACAAGGCGCTC 37546 >seq165 Length=49949 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 38326 AAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCA 38385 |||| || | ||||| || || ||||| | |||||||| || || || | || || | Sbjct 37972 AAAAGATTCAAGACAAGGAAGGTATTCCTCCTGACCAACAACGTCTTATCTTTGCCGGTA 37913 Query 38386 AACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGC 38445 |||| || || |||| || ||| | | |||||||||||||||||||||| | || || | Sbjct 37912 AACAACTCGAAGACGGTCGTACCTTGAGCGACTACAACATCCAAAAGGAATCTACTCTCC 37853 Query 38446 ATTTGGTGCTGCGT 38459 | || || || ||| Sbjct 37852 ACTTAGTTCTCCGT 37839 >seq11 Length=236632 Score = 82.4 bits (90), Expect = 8e-11 Identities = 105/145 (72%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 38326 AAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCA 38385 |||| |||| ||||| || || || || | || ||||| || ||||||| ||| |||| Sbjct 38 AAAAGATCCAAGACAAGGAAGGTATCCCTCCTGATCAACAACGTCTCATTTTCGCCGGCA 97 Query 38386 AACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGC 38445 | ||||| || || | || || | | || |||||||||||||| ||| | || || | Sbjct 98 AGCAGCTCGAAGATGGTCGTACTTTGAGTGATTACAACATCCAAAAAGAATCTACTCTTC 157 Query 38446 ATTTGGTGCTGCGTTTGAGAGGCGG 38470 | ||||| || ||| | | ||||| Sbjct 158 ACTTGGTCCTTCGTCTTCGTGGCGG 182 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500169298790400