Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizopus_20microsporus_20var._20microsporus_20[genbank_20GCA_5F00208 3745.1_202017-04-12] 560 sequences; 24,950,816 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq165 154 3e-32 seq109 152 1e-31 seq91 127 5e-24 seq11 127 5e-24 seq70 100 6e-16 seq93 91.5 3e-13 >seq165 Length=49949 Score = 154 bits (170), Expect = 3e-32 Identities = 130/157 (83%), Gaps = 2/157 (1%) Strand=Plus/Plus Query 194931 AACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGG-CAAGAGTTCTCCCATCTT 194989 ||| | ||| ||||| || || ||||| || ||||| ||| |||| || | || |||| Sbjct 37845 AACTAAGTGGAGAGTAGATTCCTTTTGGATGTTGTAGTCGCTCAAG-GTACGACCGTCTT 37903 Query 194990 CGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTT 195049 |||| || ||||| || |||||||| ||||||||||| |||||||| ||||| ||||||| Sbjct 37904 CGAGTTGTTTACCGGCAAAGATAAGACGTTGTTGGTCAGGAGGAATACCTTCCTTGTCTT 37963 Query 195050 GAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT 195086 |||| |||||||||||||| ||||||||||| ||||| Sbjct 37964 GAATCTTTTGCTTGACGTTGTCAATGGTGTCGGAACT 38000 >seq109 Length=78937 Score = 152 bits (168), Expect = 1e-31 Identities = 156/204 (76%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 ||||||||| || || |||||||| || || ||| || || | ||||||||||| || Sbjct 18317 GTGAAGAGTAGATTCCTTTTGAATGTTATAGTCGCTTAGGGTACGACCATCTTCGAGTTG 18376 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 ||||| || ||||| || |||||||| || |||||||| ||||| ||||||||||| || Sbjct 18377 TTTACCAGCAAAGATGAGACGTTGTTGATCAGGAGGAATACCTTCCTTGTCTTGAATCTT 18436 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 ||| || || || || || ||||| ||| ||| ||||| | |||| |||||||| || Sbjct 18437 TTGTTTTACATTGTCGATAGTGTCAGAAGATTCGACTTCTAAAGTAATTGTCTTTCCAGT 18496 Query 195117 CAAAGTTTTTACGAACACTTGCAT 195140 | || || || || | |||||| Sbjct 18497 AAGTGTCTTGACAAAGATTTGCAT 18520 >seq91 Length=92626 Score = 127 bits (140), Expect = 5e-24 Identities = 124/157 (79%), Gaps = 2/157 (1%) Strand=Plus/Plus Query 194931 AACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGG-CAAGAGTTCTCCCATCTT 194989 ||| | |||||| || || || |||||||| |||||||| |||| || | || |||| Sbjct 69979 AACCAAGTGAAGGGTAGATTCCTTTTGAATGTTGTAATCACTCAAG-GTACGACCGTCTT 70037 Query 194990 CGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTT 195049 |||| || ||||| ||||| || || |||||||| || ||||| || ||||| || |||| Sbjct 70038 CGAGTTGTTTACCGGCGAAAATGAGACGTTGTTGATCAGGAGGGATACCTTCCTTATCTT 70097 Query 195050 GAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT 195086 | || ||||||||||| || ||||||||||| || || Sbjct 70098 GGATCTTTTGCTTGACATTGTCAATGGTGTCAGAGCT 70134 >seq11 Length=236632 Score = 127 bits (140), Expect = 5e-24 Identities = 111/138 (80%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 ||||||||| || |||||||| || |||||||| | ||| | |||||||||||||| Sbjct 159 GTGAAGAGTAGATTCTTTTTGGATGTTGTAATCACTCAAAGTACGACCATCTTCGAGCTG 100 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 ||| || ||||| || || |||||||| || ||||| || ||||| |||||||| || || Sbjct 99 CTTGCCGGCGAAAATGAGACGTTGTTGATCAGGAGGGATACCTTCCTTGTCTTGGATCTT 40 Query 195057 TTGCTTGACGTTCTCAAT 195074 ||||||||| || || || Sbjct 39 TTGCTTGACATTTTCGAT 22 >seq70 Length=105670 Score = 100 bits (110), Expect = 6e-16 Identities = 138/192 (72%), Gaps = 6/192 (3%) Strand=Plus/Minus Query 160589 TTCTACGCCATCTGGACTTCCGATCTTTTCATGAAGAGAGTGAAAGACAATGGGGATTGG 160648 ||||| || |||||| | | |||||||||||| || | || | |||| ||| |||||| Sbjct 4229 TTCTATGCTCTCTGGATTCCTGATCTTTTCATGCAGCGTGTCAGAGACGGTGGTGATTGG 4170 Query 160649 AGCCTTTTCTGTCCCAATGAAGCGCCTGGACTTGATGATGTTTATGGTTCCGAGTTCGAG 160708 || || ||||||||||| || |||||| | |||| | | ||| |||||| | Sbjct 4169 TCTCTGTTTTGTCCCAATGAGGCTCCTGGATTACATGAAATCTGGGGTGACGAGTTTGTT 4110 Query 160709 ACTCTTTATGAAAGATACGAAAAAGAGGGAAGAGCCA---AAAAGGTCGTGAAGGCCCAA 160765 |||| ||||||| ||||||| || |||||||| | ||| | || ||||| ||| Sbjct 4109 GCTCTCTATGAAAAATACGAACGTGAAGGAAGAGCTAGAGAAACGATC---AAGGCTCAA 4053 Query 160766 GAACTGTGGCAT 160777 | |||||| || Sbjct 4052 AAGCTGTGGTAT 4041 >seq93 Length=91516 Score = 91.5 bits (100), Expect = 3e-13 Identities = 91/118 (77%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 195025 TCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAA 195084 || ||||| || ||||| |||||||| || |||||||||||||| || || | || ||| Sbjct 91516 TCAGGAGGGATACCTTCCTTGTCTTGGATCTTTTGCTTGACGTTTTCGATACTATCAGAA 91457 Query 195085 CTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCATTT 195142 ||| ||||| | |||| ||||| || || | ||| |||||||| | |||||||| Sbjct 91456 GATTCGACTTCCAAAGTAATGGTCTTGCCGGTAAGAGTCTTTACGAAGATTTGCATTT 91399 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109473639469520