Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizopus_20microsporus_20var._20microsporus_20[genbank_20GCA_5F00208 3745.1_202017-04-12] 560 sequences; 24,950,816 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq106 280 2e-70 seq53 118 1e-21 >seq106 Length=79482 Score = 280 bits (310), Expect = 2e-70 Identities = 569/837 (68%), Gaps = 12/837 (1%) Strand=Plus/Plus Query 18672 TTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACAT-T 18730 |||||| |||| || | ||||||||||| || || || || | | || || ||| | Sbjct 37103 TTGATAATCGGAGACACGCTTTTCAAAGAAGTTGGTCTTGCCTTGGAGAGAGAT-CATGT 37161 Query 18731 CCATAAAATCAAATGGATTTTTTACATTATATAtttttttGAATCCTAATTCTAATAGTA 18790 ||||||| ||||||||||| | | | || || || | ||| || | | | | | Sbjct 37162 CCATAAAGTCAAATGGATTAGTAGCCATGTAAATCTTGTCGAACCCAAGAGCAACCATGA 37221 Query 18791 GTCTATCCGCTACAAATTTAATATATGTGTTCATCATATCACAATTCATTCCTATTAATT 18850 | | ||| || || |||| ||| ||| ||||| || ||||||| || || | Sbjct 37222 GACGATCAGCAACGAATTCAATGTATTGACACATCAAGGCAGAATTCATGCCAATGAGAG 37281 Query 18851 TAACAGGTAGTGCATCTGTAAGAAATTCTTGTTCTATATTTACTGCCTCTGATATAATAG 18910 ||| || || ||||| || | |||||||||||| || | || || || | || ||| Sbjct 37282 CAACGGGAAGAGCATCCGTCAAAAATTCTTGTTCAATGCTGACAGCTTCCAAGATGATAT 37341 Query 18911 ATACAACTCTATCTTCATTAGGAGGGTATAGAAGATGTTTAAACATCAAACATGCAAAAT 18970 || | |||| ||||| | | |||| || |||| | | ||| ||||| | Sbjct 37342 CCTTGACGCGTTCTTGGCTAGGACGCTTACGAAGGTGGGTAAATAAAAGACAAGCAAAGT 37401 Query 18971 CACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCA 19030 || ||| || || || || | || ||||||||||| ||||| ||||| ||||||| Sbjct 37402 CAGTATGAAGACCTTCATCACGACAGATCAATTCATTGCTGAATGTCAAACCGGGCATCA 37461 Query 19031 GTCCTCttttttttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTA 19090 || | ||| || | ||| || || |||||||| || ||||| ||||| |||||||| | Sbjct 37462 AACCACGTTTCTTGAGCCAAAAGATGGAAGCAAAGGAACCAGAGAAGAAGATACCTTCGA 37521 Query 19091 CTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCATCATTATTATG-AATCCATTTC 19149 | || ||||| ||||| || | || || || | | | | | | |||||| || Sbjct 37522 CAGCAGCAAAGGCAACAAGGCGCTCAGCA----AAGGAACCGTTTGAGGAAATCCACTTG 37577 Query 19150 AGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCTATAGAATTAAATAG-ATA 19208 | |||||||||||||| | || | ||| || || || || |||| | ||| || || Sbjct 37578 AAGGCCCAATCAGCCTTTCTCTTGATACAAGGGATAGTGTCAATAGCAGAAAAGAGCATT 37637 Query 19209 CATACGCTCATCTGTATCTTTAACATATGCATCTATCAATAAACTGTACATTTCTGAATG 19268 | ||| | ||||||| | ||| | || ||||| | |||||| |||||| || Sbjct 37638 TCT-TTCTCTTGGTTATCTTTGATATAAGTGTCAATCAAAAGACTGTAAGTTTCTGCGTG 37696 Query 19269 AATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCTGTTATCTGTACTTC 19328 ||| ||||| || || ||||| || || |||||| | ||||| | |||| ||||| Sbjct 37697 AATGTTTTCAATCATGATTTGAAAGCCATAGAAACATTTAGCTTCAGGAATCTTGACTTC 37756 Query 19329 ACTACAAAATCTTTCGACCAAATTTTCATTAACTATTCCATCACTAGCTGCAAAAAATGC 19388 | |||||| ||| ||||| ||||||||||| || ||||| | | ||||| || || Sbjct 37757 ATCACAAAAGTTTTGAACCAAGTTTTCATTAACAATGCCATCTGAACCAGCAAAGAAGGC 37816 Query 19389 TAATACATGTTTAATAAAATGTTTTTCATCTGAGGTTAATGTATT---CCAATCATTAAT 19445 || ||| | ||||| ||||| | ||| | | | || |||||||| || Sbjct 37817 CAAGACACGAGAGATAAAGAAACGTTCATTTTCGGTCATTTTGTTTTCCCAATCATGAAG 37876 Query 19446 ATCTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCTGCTTTTTTATA 19502 ||| || ||||| | ||||||| |||||||||| ||||| || ||||||||||| Sbjct 37877 ATCCTTGCTCAAATCGATTTCTTCAGCTGTCCAAAAGGAAGCTTCAGCTTTTTTATA 37933 >seq53 Length=125223 Score = 118 bits (130), Expect = 1e-21 Identities = 427/669 (64%), Gaps = 5/669 (1%) Strand=Plus/Minus Query 47019 AAATAATACATACCAGTCTTTAAACCTAAACTCCATCCATAGAAATGCATACTAGTTAAT 47078 ||||| ||||| |||||||||| || |||| |||| || |||||| ||| ||| Sbjct 93112 AAATAGTACATGCCAGTCTTTAGTCCCTTCTTCCAGGCATAAAAGTGCATAGAAGTCAAT 93053 Query 47079 TTAGAATAACTAGGTTCTGAAATATGAATATTAAGAGATTGACTCTGATCAATAAATGCA 47138 || | | | ||||| | | || | ||| | ||||||| ||||||||||| || Sbjct 93052 TTGCCAAAGTTTGGTTCGGCAGTAAATAAATTCATAGATTGAGATTGATCAATAAAGGCT 92993 Query 47139 CCTCTATCAGCTGCCATATCTAAAATAACCCTTTGTGGTATCTCCCATACTGTTTTATAA 47198 ||||||||||| ||||| || | |||| ||||||| |||||||| || || || || Sbjct 92992 CCTCTATCAGCGGCCATGTCAATAATAGTTCTTTGTGAAATCTCCCACACGGTCTTGTAT 92933 Query 47199 ATTTGTTTAATGTCTTCTGG---GAGATTAGTATTTTGAATAGATCCTCCgttttctata 47255 | || ||| | || || || | | | || || ||| || || | | || Sbjct 92932 AGTTTTTTGAGATCATCAGGAATGCCAGGAATACGCTGGATACTACCGCCATGAGCGATC 92873 Query 47256 attttgttttttaattcatttgaccaaagttttcgttcagttaatgtttttaaAAGATGA 47315 || |||| || | | || ||| | | ||||| | | || || | ||| Sbjct 92872 ATCATGTTCTTGATGTTATCATTCCATAAATCGAGTTCAATGAGATCATTCAATAAATGC 92813 Query 47316 GGATTAACAATTTGAAATTCTCCAGATAGTACTCTACGGCTATATATATTACTTGTATAT 47375 | || || ||||| ||||| || | | || | ||| |||| ||||| || || || Sbjct 92812 TGGTTGACTATTTGGAATTCACCGCTTTGAACACGACGCGTATAAATATTGCTAGTGTAA 92753 Query 47376 GGTTCTATAGATTCATTATTTCCAAAAATTTGAGCAGTTGATGCTGTAGGCATGGATGCA 47435 || || | |||| ||||| || || |||||| ||| || |||||||| | ||| Sbjct 92752 GGCTCGAAGCATTCGTTATTACCCAATATTTGACTAGTGCTAGCAGTAGGCATAGGAGCA 92693 Query 47436 ACTAATAAGCTA-TTTCTTACTCCATATTTTTGTATCTNNNNNNNNNNNNGTTTCCAATC 47494 || || ||| | || | || |||||||| || | |||||||| Sbjct 92692 AC-AAGAAGAGAGTTACGGACACCATATTTCCTGATATTGGCTCTCAAAGTATTCCAATC 92634 Query 47495 CCAAAGATCTGATGGAACAACATTCCAAAAATCATATTGAAGAATTCCTTTACTTATCGG 47554 | | || || |||||||| ||||| | ||||||||| |||| ||||| || Sbjct 92633 GAGATGTTCCGAGCCTTTGACATTCCATAAATCGTGTTGAAGAATACCTTGACTTACAGG 92574 Query 47555 AGAACCATTATATGTTTTATAAGGACCGTATAGTTTAGCGAGTTCACAACTTGCTTCCAA 47614 || || | || || | ||| || || | | ||| || || ||||| ||||| | Sbjct 92573 CGAGCCTTCGTAAGTCTCATAGGGTCCCTGTTCTTTGGCAAGCTCACATGAAGCTTCTAG 92514 Query 47615 TGCACTATAATATATTGTTTCAAATATTTTTATGTTTAGATTCCTTGCTTCTGATGATTC 47674 ||| | |||| ||| |||| || || | | |||| | | ||||| | || || Sbjct 92513 AGCAGCAAAATAGATTCTTTCGAAAATATCTCTGTTCAATTGAGCAGCTTCAGGAGAATC 92454 Query 47675 AAAAGGATA 47683 ||| ||||| Sbjct 92453 AAAGGGATA 92445 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562104865238400