Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizopus_20microsporus_20var._20microsporus_20[genbank_20GCA_5F00208 3745.1_202017-04-12] 560 sequences; 24,950,816 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq70 147 4e-30 seq106 87.8 3e-12 >seq70 Length=105670 Score = 147 bits (162), Expect = 4e-30 Identities = 734/1156 (63%), Gaps = 40/1156 (3%) Strand=Plus/Plus Query 221351 TTAGACACCGGACTCCCATCGTACGACTCGTAGGGACCGTACAGTTCGGCCTGGGCGCAA 221410 || ||||| || || || || || | ||||| || || ||| ||| ||| |||| Sbjct 3526 TTGGACACAGGGCTGCCTTCATAGGTTTCGTAAGGTCCATACTTTTCAGCCAACTCGCAG 3585 Query 221411 GACTGCGTC-AGGGCAGCGTGGTAGATGGTCTCAAAGATCATCTTGTTGAGTCTCTTGGC 221469 || || || |||||||| ||||||||||| |||||||| |||| | |||||| Sbjct 3586 GAG-GCTTCCAGGGCAGCATGGTAGATGGTTTCAAAGATTTGAATGTTCAACTGCTTGGC 3644 Query 221470 CTCGGGAGAAGTGAAGGGCATACGCAGCATC-TGAAAGACGTCGGCCAGTCCCTGTACTC 221528 || || ||| ||| || ||| || | |||||| |||||| | || || || | Sbjct 3645 TTCAGGTGAATCGAATGGATAACGAAGAGCCATGAAAG-TGTCGGCTAAGCCTTGAACAC 3703 Query 221529 CGATACCGATGGGCCTGTGTCTCCTGTTGGAAGCGGCCGCTTCTGGCACGGGATAAAAGT 221588 | | ||| || || ||||||||| ||||||| | ||||| || ||||| | | Sbjct 3704 CTAAACCAATCGGTCTGTGTCTCTTGTTGGATCTTTCGGCTTCGATGACAGGATAGTAAT 3763 Query 221589 TGACGTCGATCAGATTGTTGAGGTTCAGAGTGATGACTTTAACCACCTCGGTCAGCTTCT 221648 ||| ||||| | ||||| | ||| |||||| || || || ||| ||| || | Sbjct 3764 TGATATCGATGATCTTGTTCAAGTTTCTAGTGATAACCTTGGTAACATCGTGCAGTTTTT 3823 Query 221649 GGTGATTGAACACCAACTCGCCGCCGTCGTGGAGGGGTTCCACAAAAGCGTTTAGGGCAA 221708 | ||| | ||| | | | | |||| | | || |||| Sbjct 3824 G------GAAATCATACTTTTCTCTATTG---------ATCACATAGGTAGGCAGAGCAA 3868 Query 221709 CGCTGGCCAGGTTACACACGGCCACCTCGTCCTTGTTGGTATACTGTATGATCTCTGTAC 221768 | ||||| |||||| || || || || || | | || | | || ||||||| Sbjct 3869 TGGAGGCCAAGTTACAGACAGCGACTTCATCAGGACTCGAGTATTCAACAATTTCTGTAC 3928 Query 221769 AGAGGTTGCTGCACTTGATGGTCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCGT 221828 | || |||||||||||||| || |||| || | |||||| ||| | || ||| | Sbjct 3929 ACAGATTGCTGCACTTGATCGTACCCAAGTTTTGCTGATTACTCTTTCTGTTACAAGCAT 3988 Query 221829 CCTTGTAGAGCATAAAGGGACCGCCAGTCTCCAGCTGAGCCACCAGAATCTTGTCCCAGA 221888 |||| ||||| || || ||| ||| |||||| ||||| ||| ||| | ||| | Sbjct 3989 CCTTATAGAGTATGAATGGATTGCCTGTCTCCGTTTGAGCTTCCAAAATGGCATACCACA 4048 Query 221889 GTTCTCTGGCGCTCACCG-TCCTCT-----TGACTGCACCCTCGGTCTTTTCATACCCGG 221942 | | | || | | || | |||| | || ||| ||| |||||| Sbjct 4049 GCTTTTGAGCCTTGATCGTTTCTCTAGCTCTTCCTTCACGTTCGTATTTTTCA------- 4101 Query 221943 TATAGAGCATGTCAAACTTTTCACCGTACGCCTCGTCCAGGCCTGGACACCTGGCGGGAC 222002 || |||||| |||||| ||||| | || | | || ||| | ||||| Sbjct 4102 TAGAGAGCA--ACAAACTCGTCACCCCAGATTTCATGTAATCCAGGAGCCTCATTGGGAC 4159 Query 222003 ACATCAGACTCCAGTGCTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCACA 222062 | | |||| ||| | |||| |||| | ||||||||| || || || ||||| | Sbjct 4160 AAAACAGAGACCAATCACCACCGTCTCTGACACGCTGCATGAAAAGATCAGGAATCCAGA 4219 Query 222063 GCGCCTGAAAGAGATCTCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATCCA 222122 | || | || ||||| | | || || || ||| |||||| | || || | Sbjct 4220 GAGCATAGAACAGATCACGAGCCCTGATTTCGTCTTTGCCAAAGTTTTTTCGCAAGTCTA 4279 Query 222123 AAAACTCAAAAATGTCAGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCGCT 222182 |||| ||||||||| || ||||| || |||| || | || | ||||| || |||| Sbjct 4280 AAAAGGTAAAAATGTCTGCATGCCAAGGTTCCAAGTACATTGCGAATGCGCCCGGACGCT 4339 Query 222183 TGTTGCCACCCTGATCCACCATCCTCTCCAGAGCGTTGAAGATGCGAAGGGTCGGTACCA 222242 | || ||||| ||||| || | || | |||||| | || || | || | || Sbjct 4340 TATTACCACCTTGATCGACATAACGAGCCGTATTGTTGAAAACACGTAGCATGGGCAACA 4399 Query 222243 GTCCGTTGGATCGACCGTTGGTGCCCTTAATGTACGCACCGCCGGCCCTCAGGTTACTGG 222302 ||||||||| |||||||||||| |||||| | || | || | | ||| || Sbjct 4400 ATCCGTTGGAGTAACCGTTGGTGCCGGCAATGTATGATCCACTAGCACGAATGTT-GTGA 4458 Query 222303 CAG-ACATGCCGATACCACCGGCGTGT-TTCGAGATCATGGCGCAGCTCTTGAGAGTGTC 222360 | | ||| ||||| || || ||| || ||||| || ||| | ||||| || || Sbjct 4459 ATGTTTAAGCCAATACCGCCTGC-TGTCTTGGAGATTTGAGCACAGATTTTGAGCGTCTC 4517 Query 222361 CATGATGCCCTCCATAGAGTCCTCCTTGACGTTCAGCAGAAAACAAGACGACATCT-GAG 222419 ||| || || || || || || || | | | |||| || ||||| ||||||| | | Sbjct 4518 ATAGATACCTTCGATCGAATCTTCTTTCATGGTGAGCAAGAAGCAAGAAGACATCTGGGG 4577 Query 222420 ATTTGGTGGAACAGGCGTTAAACAGCGTGGGACTGGCGTGTGTAAAGTAGCCCCTAGACA 222479 | ||| | | || ||||| || || ||||| |||||||||||||| | |||| Sbjct 4578 ACGAGGT-GTGCCTGCATTAAATAGAGTAGGACTAGCGTGTGTAAAGTATCTTTCGGACA 4636 Query 222480 TCAGATCGTACGTCTC 222495 ||| | ||| ||||| Sbjct 4637 TCAAGTTGTATGTCTC 4652 >seq106 Length=79482 Score = 87.8 bits (96), Expect = 3e-12 Identities = 129/178 (72%), Gaps = 5/178 (3%) Strand=Plus/Minus Query 25774 GAGAGAGATCGGCTGTTTGGTGCCATCGAGCAC-ATACCCAGCATCAAGAGGAAGGCGCG 25832 |||| ||| ||| ||| ||| || || ||| || || | |||||||| ||||| Sbjct 37645 GAGAAAGAAATGCTCTTTTCTGCTATTGA-CACTATCCCTTGTATCAAGAGAAAGGCTGA 37587 Query 25833 GTGGGCCATGAAGTGGATCAACAGCCAGAGCGCTACGTTTGGCGAGCGGCTGGTAGCCTT 25892 |||||| | |||||||| | || | || | | |||| ||||| || || ||||| Sbjct 37586 TTGGGCCTTCAAGTGGATTTCCT--CAAA-CGGTTCCTTTGCTGAGCGCCTTGTTGCCTT 37530 Query 25893 TGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCTGGCTCAAG 25950 ||||||||| || || ||||| ||| ||||| ||||| ||||||| ||||||||| Sbjct 37529 TGCTGCTGTCGAAGGTATCTTCTTCTCTGGTTCCTTTGCTTCCATCTTTTGGCTCAAG 37472 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928838298086400