Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizopus_20microsporus_20var._20microsporus_20[genbank_20GCA_5F00208 3745.1_202017-04-12] 560 sequences; 24,950,816 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq106 129 9e-25 seq109 111 2e-19 >seq106 Length=79482 Score = 129 bits (142), Expect = 9e-25 Identities = 369/561 (66%), Gaps = 22/561 (4%) Strand=Plus/Plus Query 18150 ATAATAAACACGCAAAATCAGTGTGTAAACCTTCATCTCTGGATATTAATTCGTTACTAA 18209 |||| | ||| ||||| ||||| || | ||||||||| | | || ||||| || || | Sbjct 37384 ATAAAAGACAAGCAAAGTCAGTATGAAGACCTTCATCACGACAGATCAATTCATTGCTGA 37443 Query 18210 ACGTTAACCCGGGCATTATACCTCttttttttAGCCAAAATATCGATGCGAAACTACTAG 18269 | || || |||||||| | ||| | ||| || |||||||| || || || || || || Sbjct 37444 ATGTCAAACCGGGCATCAAACCACGTTTCTTGAGCCAAAAGATGGAAGCAAAGGAACCAG 37503 Query 18270 AAAAGAATATACCCTCAAC-GCACGCGAACGCTATTAATCTTTCAGCAAA---ACTGTAT 18325 | ||||| ||||| || || ||| || || || | | | |||||||| || || Sbjct 37504 AGAAGAAGATACCTTCGACAGCA-GCAAAGGCAACAAGGCGCTCAGCAAAGGAACCGT-- 37560 Query 18326 TTATTGCTCAGTATCCATTTTTGTGCCCATTCTCCTTNNNNNNNNATACACGGTATACTC 18385 ||| | ||||| || ||||| || | | ||||| || ||| | Sbjct 37561 ---TTGAGGAA-ATCCACTTGAAGGCCCAATCAGCCTTTCTCTTGATACAAGGGATAGTG 37616 Query 18386 TCTATAGCATTAAACAAATCATCTTTTTCTTTGGAATCTTTTATATAAGTGTCGATTAAC 18445 || |||||| ||| | ||||| |||| | |||||| ||||||||||| || || Sbjct 37617 TCAATAGCAGAAAAGAGCATTTCTTTCTCTTGGTTATCTTTGATATAAGTGTCAATCAAA 37676 Query 18446 AAAGAATACATTTCAGAATGTATGCTTTCCATAGCTATCTGAAAACTATAAAACGATCTA 18505 | | || |||| | || ||| |||| || || ||||| | ||| || || || Sbjct 37677 AGACTGTAAGTTTCTGCGTGAATGTTTTCAATCATGATTTGAAAGCCATAGAAACATTTA 37736 Query 18506 GCCTC-GGGATATTGAATCTCGCTATAAAATCTTTCTACCAAATTCTCATTAACTATACC 18564 || || || || |||| | || | |||| ||| ||||| || |||||||| || || Sbjct 37737 GCTTCAGGAATCTTGACT-TCATCACAAAAGTTTTGAACCAAGTTTTCATTAACAATGCC 37795 Query 18565 GTCAGCAGATGCGAAAAATGCCAAAAC---ATATTTAATGAAATGTTTTTCATTATCCTT 18621 || | | || || || ||||| || | | ||| |||| | |||||| || | Sbjct 37796 ATCTGAACCAGCAAAGAAGGCCAAGACACGAGAGATAAAGAAACG---TTCATTTTCGGT 37852 Query 18622 GAGATTGTT---CCATTCATCTATATCTTTTGATAGATCAACTTCTTCCGATGTCCAAAA 18678 | ||||| ||| |||| | ||| || | ||| | |||||| | ||||||||| Sbjct 37853 CATTTTGTTTTCCCAATCATGAAGATCCTTGCTCAAATCGATTTCTTCAGCTGTCCAAAA 37912 Query 18679 AGATGATTCGGCCTGTTTGTA 18699 || | ||| || | ||| || Sbjct 37913 GGAAGCTTCAGCTTTTTTATA 37933 >seq109 Length=78937 Score = 111 bits (122), Expect = 2e-19 Identities = 118/156 (76%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| ||| | || ||| | |||||||| || ||||| |||||||||||| |||| Sbjct 18520 ATGCAAATCTTTGTCAAGACACTTACTGGAAAGACAATTACTTTAGAAGTCGAATCTTCT 18461 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | ||| || || ||| | || || ||||| || ||||| || ||||| || ||| Sbjct 18460 GACACTATCGACAATGTAAAACAAAAGATTCAAGACAAGGAAGGTATTCCTCCTGATCAA 18401 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGAT 155978 ||| | | || | ||| ||||| || ||||||||| Sbjct 18400 CAACGTCTCATCTTTGCTGGTAAACAACTCGAAGAT 18365 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731866876896000